کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
4978405 1452369 2017 6 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
compuGUT: An in silico platform for simulating intestinal fermentation
موضوعات مرتبط
مهندسی و علوم پایه مهندسی کامپیوتر نرم افزار
پیش نمایش صفحه اول مقاله
compuGUT: An in silico platform for simulating intestinal fermentation
چکیده انگلیسی

The microbiota inhabiting the colon and its effect on health is a topic of significant interest. In this paper, we describe the compuGUT - a simulation tool developed to assist in exploring interactions between intestinal microbiota and their environment. The primary numerical machinery is implemented in C, and the accessory scripts for loading and visualization are prepared in bash (LINUX) and R. SUNDIALS libraries are employed for numerical integration, and googleVis API for interactive visualization. Supplementary material includes a concise description of the underlying mathematical model, and detailed characterization of numerical errors and computing times associated with implementation parameters.

ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: SoftwareX - Volume 6, 2017, Pages 237-242
نویسندگان
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