Nanosecond dynamics of influenza A/M2TM and an amantadine resistant mutant probed by time-dependent red shifts of a native tryptophan

Proteins involved in functions such as electron transfer or ion transport must be capable of stabilizing transient charged species on time scales ranging from picoseconds to microseconds. We study the influenza A M2 proton channel, containing a tryptophan residue that serves as an essential part of the proton conduction pathway. We induce a transition dipole in tryptophan by photoexcitation, and then probe the dielectric stabilization of its excited state. The magnitude of the stabilization over this time regime was larger than that generally found for tryptophan in membrane or protein environments. M2 achieves a water-like stabilization over a 25 ns time scale, slower than that of bulk water, but sufficiently rapid to contribute to stabilization of charge as protons diffuse through the channel. These measurements should stimulate future MD studies to clarify the role of sidechain versus non-bulk water in defining the process of relaxation.

.Highlights► Examined nanosecond dynamics of essential tryptophan residue of M2 proton channel. ► Channel blocking drugs restrict the ability of M2 to stabilize charge. ► Dielectric relaxation of M2 consistent with molecular dynamics simulation studies.