Article ID | Journal | Published Year | Pages | File Type |
---|---|---|---|---|
1869997 | Physics Procedia | 2015 | 9 Pages |
Abstract
An extension of the multiple time-step integration following Kopf et al. (1997) for the Langevin thermostat and modified Ander- sen barostat is described. Proper isothermal and isobaric properties are validated on a Lennard-Jones liquid and a coarse-grained peptide-lipid model. Measurements of the configurational temperature indicate proper canonical sampling, while folding simu- lations of unstructured peptides into transmembrane helices provide a realistic application and suggest the maximum set of time steps usable for that model.
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