Article ID Journal Published Year Pages File Type
2188488 Journal of Molecular Biology 2007 9 Pages PDF
Abstract

The influence of monovalent cations on DNA conformation and readout is an open question. This NMR study of DNA with either Na+ or K+ at physiological concentrations shows that the nature of the cation affects the 31P chemical shifts (δP) and the sequential distances H2′i–H6/8i+1, H2ʺi–H6/8i+1, and H6/8i–H6/8i+1. The δP and distance variations ascertain that the nature of the cation affects the DNA overall structure, i.e. both the conformational equilibria between the backbone BI (ε–ζ < 0°) and BII (ε–ζ > 0°) states and the helical parameters, via their strong mechanical coupling. These results reveal that Na+ and K+ interactions with DNA are different and sequence-dependent. These ions modulate the overall intrinsic properties of DNA, and possibly its packaging and readout.

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Life Sciences Biochemistry, Genetics and Molecular Biology Cell Biology
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