Article ID Journal Published Year Pages File Type
2829922 Molecular and Biochemical Parasitology 2011 5 Pages PDF
Abstract

RNA interference is the most rapid method for generation of conditional knockdown mutants in Trypanosoma brucei. The dual T7 promoter (pZJM) and the stem-loop vectors have been widely used to generate stable inducible RNAi cell lines with the latter providing tighter regulatory control. However, the steps for cloning stem-loop constructs are cumbersome requiring either multiple cloning steps or multi-fragment ligation reactions. We report the development of a vector (pTrypRNAiGate) derived from pLEW100 that utilizes the Gateway® recombination system to facilitate easy production of hairpin RNA constructs. This approach allows the final stem-loop RNAi construct to be generated from a single cloning step of the PCR-derived gene fragment followed by an in vitro recombination reaction. The new vector facilitates high-throughput applications for gene silencing and provides a tool for functional genomics in T. brucei.

Graphical abstractFigure optionsDownload full-size imageDownload high-quality image (104 K)Download as PowerPoint slideHighlights► Development of a Gateway vector for generation of stem loop RNAi constructs for Trypanosoma brucei. ► Using this approach the final vector is generated via cloning of a single PCR fragment followed by a recombination reaction. ► New vector tested for three polyamine biosynthetic genes and shown to give similar results to standard stem-loop constructs. ► Vector facilitates rapid cloning of stem loop RNAi constructs.

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