Article ID | Journal | Published Year | Pages | File Type |
---|---|---|---|---|
4598804 | Linear Algebra and its Applications | 2016 | 12 Pages |
Abstract
We apply matrix theory over F2F2 to understand the nature of so-called “successful pressing sequences” of black-and-white vertex-colored graphs. These sequences arise in computational phylogenetics, where, by a celebrated result of Hannenhalli and Pevzner, the space of sortings-by-reversal of a signed permutation can be described by pressing sequences. In particular, we offer several alternative linear-algebraic and graph-theoretic characterizations of successful pressing sequences, describe the relation between such sequences, and provide bounds on the number of them. We also offer several open problems that arose as a result of the present work.
Keywords
Related Topics
Physical Sciences and Engineering
Mathematics
Algebra and Number Theory
Authors
Joshua Cooper, Jeffrey Davis,