| Article ID | Journal | Published Year | Pages | File Type |
|---|---|---|---|---|
| 5372748 | Chemical Physics | 2017 | 10 Pages |
â¢QM/MM study of the adsorption of the adenine and cytosine on the Au nano surface.â¢ONIOM calculation of the interaction and adsorption energies of adenine and cytosine.â¢Correlation diagram between the molecular orbitals of isolated and adsorbed bases.
In this work, the adsorption of the adenine (AD) and cytosine (CY) on the Au(111) nano surface (AD@Au and CY@Au) have been examined in the framework of combined quantum mechanics/molecular mechanics (QM/MM) methodology using two-layer ONIOM method and different density functional theory (DFT) functionals in the absence of periodic boundary conditions (PBC). It was found by selecting an appropriate size for the Au surface, the results obtained using QM/MM method were in good agreement with those obtained via the periodic DFT calculations with the same functional. The calculated adsorption energies (Ead) using M06-2X and M06-L functional were in good agreement with those, recently, obtained using periodic DFT calculations considering PBC and employing van der Waals (vdW) DFT functionals. The correlation diagram between the molecular orbitals of isolated deformed AD (AD-D) and CY (CY-D) and their molecular orbitals in AD@Au and CY@Au systems have also been investigated in this work.
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