Article ID | Journal | Published Year | Pages | File Type |
---|---|---|---|---|
5416737 | Journal of Molecular Structure: THEOCHEM | 2010 | 7 Pages |
Abstract
Protein-ligand interactions, including enzyme-drug interactions, often depend on a variety of non-covalent bonds. Ring-ring interactions, though generally weaker than other non-covalent interactions, are important both in the binding of ligands to proteins, and also in the specific 3-D orientation of the ligand molecule in the protein binding site. We calculated the counterpoise-corrected interaction energies and relative stabilities of complexes of six-membered carbon rings using MP2/aug-cc-pvdz. These two-ring complexes, each with three, two, one, or no double bonds per ring, serve as models for the above mentioned protein-ligand binding. Using MP2/aug-cc-pvdz as a standard, we also evaluated the accuracy of MP2 with smaller basis sets. Further we compared Hartree-Fock and several DFT methods with MP2 in order to see if these less resource-intensive methods could achieve and accuracy comparable to MP2. We find that smaller basis sets within the MP2 theory reproduce accurate trends and relative energies of complexes compared to aug-cc-pvdz, and the HCTH407 DFT method can reproduce accurate relative energies for most of the complexes studied here. We also compute HCTH407-level polarizabilities of the rings and examine the relationship between these values and the interaction energies.
Related Topics
Physical Sciences and Engineering
Chemistry
Physical and Theoretical Chemistry
Authors
Karina Van Sickle, Michelle C. Shroyer, Mauricio Cafiero,