Article ID | Journal | Published Year | Pages | File Type |
---|---|---|---|---|
5589539 | Gene | 2017 | 38 Pages |
Abstract
In this study, de novo transcriptome assembly and gene expression analysis using Illumina sequencing technology were performed. Transcriptomic analysis assembles gene-related information involved in reproductive growth of C. sinensis. Gene Ontology (GO) analysis of the annotated unigenes revealed that the majority of sequenced genes were associated with metabolic and cellular processes, cell and cell parts, catalytic activity and binding. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis indicated that metabolic pathways, biosynthesis of secondary metabolites, and plant hormone signal transduction were enriched among the DEGs. Furthermore, 207 flowering-associated unigenes were identified from our database. Some transcription factors, such as WRKY, ERF, bHLH, MYB and MADS-box were shown to be up-regulated in floral transition, which might play the role of progression of flowering. Furthermore, 14 genes were selected for confirmation of expression levels using quantitative real-time PCR (qRT-PCR). The comprehensive transcriptomic analysis presents fundamental information on the genes and pathways which are involved in flower development in C. sinensis. Our data also provided a useful database for further research of tea and other species of plants.
Keywords
APETALA1ARFAP1FLCLFYSOC1RPKMFRICamellia sinensis (L.) O. KuntzeLATE ELONGATED HYPOCOTYLCoGVrn1Vrn2WRKYCCA1LHYELF4PIF3ELF3LuminidependensAP2ERFRNA-seqDEGsbHLHApetala 2basic helix-loop-helixLEAFYRNA sequencingFlowering locus TFlower developmentconstantsgibberellic acidclusters of orthologous groupsKEGG یا Kyoto Encyclopedia of Genes and Genomes Kyoto Encyclopedia of Genes and GenomesFMITranscription factorethylene response factorAuxin response factorGene ontologyDifferentially expressed genescalFLOWERING LOCUS CCauliflowerGIGANTEA
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Authors
Feng Liu, Yu Wang, Zhaotang Ding, Lei Zhao, Jun Xiao, Linjun Wang, Shibo Ding,