Article ID | Journal | Published Year | Pages | File Type |
---|---|---|---|---|
6116633 | Human Immunology | 2016 | 8 Pages |
Abstract
Genotype list (GL) Strings use a set of hierarchical character delimiters to represent allele and genotype ambiguity in HLA and KIR genotypes in a complete and accurate fashion. A RESTful web service called genotype list service was created to allow users to register a GL string and receive a unique identifier for that string in the form of a URI. By exchanging URIs and dereferencing them through the GL service, users can easily transmit HLA genotypes in a variety of useful formats. The GL service was developed to be secure, scalable, and persistent. An instance of the GL service is configured with a nomenclature and can be run in strict or non-strict modes. Strict mode requires alleles used in the GL string to be present in the allele database using the fully qualified nomenclature. Non-strict mode allows any GL string to be registered as long as it is syntactically correct. The GL service source code is free and open source software, distributed under the GNU Lesser General Public License (LGPL) version 3 or later.
Keywords
EMBLsoftware development kitSSPURIGenotype ListJDBCOIDPNGIMGTHL7CDISCClinical Data Interchange Standards ConsortiumHMLNMDPRDBMSHTMLJSONOWLSQLGNUQuick response codeHTTPFDAENASDKAWSsequence specific oligonucleotidehypertext markup languageSSOSBTNGShypertext transfer protocolNCIAPIKirRDFEuropean Molecular Biology LaboratorySequence Specific Primerhuman leucocyte antigenHLAXMLISOImmunogeneticsReSTEuropean Nucleotide ArchiveNational Marrow Donor ProgramSequence based typingNext generation sequencingrandom access memoryDASHApplication Program InterfaceRamextensible markup languageWeb ontology languageStructured query languageInternational Organization for StandardizationFood and Drug AdministrationRelational database management systemmajor histocompatibility complexMHCNational Cancer InstituteURLGenotypeQR codeMugkiller-cell immunoglobulin-like receptoruniform resource locator
Related Topics
Life Sciences
Immunology and Microbiology
Immunology
Authors
Robert P. Milius, Michael Heuer, Mike George, Jane Pollack, Jill A. Hollenbach, Steven J. Mack, Martin Maiers,