Article ID Journal Published Year Pages File Type
977789 Physica A: Statistical Mechanics and its Applications 2013 19 Pages PDF
Abstract

•A cross diffusion model of bacterial growth with nutrient chemotaxis is studied.•The chemotaxis increases the asymptotic growth speed of the colony envelope front.•High resolution numerical simulations using GPUs are presented.

This paper studies a reaction–diffusion–chemotaxis model for bacterial aggregation patterns on the surface of thin agar plates. It is based on the non-linear degenerate cross diffusion model proposed by Kawasaki et al. (1997) [5] and it includes a suitable nutrient chemotactic term compatible with such type of diffusion, as suggested by Ben-Jacob et al. (2000) [20]. An asymptotic estimation predicts the growth velocity of the colony envelope as a function of both the nutrient concentration and the chemotactic sensitivity. It is shown that the growth velocity is an increasing function of the chemotactic sensitivity. High resolution numerical simulations using Graphic Processing Units (GPUs), which include noise in the diffusion coefficient for the bacteria, are presented. The numerical results verify that the chemotactic term enhances the velocity of propagation of the colony envelope. In addition, the chemotaxis seems to stabilize the formation of branches in the soft-agar, low-nutrient regime.

Related Topics
Physical Sciences and Engineering Mathematics Mathematical Physics
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