Article ID Journal Published Year Pages File Type
10334262 Theoretical Computer Science 2005 21 Pages PDF
Abstract
The Partial Digest problem asks for the coordinates of m points on a line such that the pairwise distances of the points form a given multiset of m2 distances. Partial Digest is a well-studied problem with important applications in physical mapping of DNA molecules. Its computational complexity status is open. Input data for Partial Digest from real-life experiments are always prone to error, which suggests to study variations of Partial Digest that take this fact into account. In this paper, we study the computational complexity of Partial Digest variants that model three different error types that can occur in the data: additional distances, missing distances, and erroneous fragment lengths. We show that these variations are NP-hard, hard to approximate, and strongly NP-hard, respectively.
Related Topics
Physical Sciences and Engineering Computer Science Computational Theory and Mathematics
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