Localized expression of genes related to carbohydrate and lipid absorption along the crypt–villus axis of rat jejunum

BackgroundEnterocytes of the jejunum express several genes related to digestion/absorption of nutrients and ions when these cells rapidly differentiate from crypt to villus cells. However, it is unknown whether the distribution of extensive gene expression along the villus–crypt axis of the jejunum is altered during differentiation.MethodsWe investigated the changes in jejunal gene expression during differentiation from crypt to villus cells in rats using DNA microarray analysis on cryostat sections of the villus–crypt columns.ResultsDuring differentiation, the expression of many genes related to cell growth rapidly decreased, while expression of genes related to digestion and absorption of nutrients and ions increased. Expression of a subset of genes related to the digestion and absorption of starch and sucrose was highest at the middle of the villi, whereas expression of genes related to dietary fat absorption was highest at the top of the villi. Several transcriptional factors such as Pdx1, Foxa2 and Thra were expressed in the crypt, whereas Klf15 was highly expressed during the crypt–villus transition. Expression of Klf4 and Pparg was highest at the top of the villi.ConclusionsSubsets of genes related to the digestion and absorption of starch/sucrose and dietary fat as well as their transcriptional factors/co-factors are expressed in the specific locations along the crypt–villus axis.General SignificanceThe jejunum may absorb nutrients effectively by simultaneously expressing subsets of genes along the villus-crypt axis.