Article ID Journal Published Year Pages File Type
419023 Discrete Applied Mathematics 2014 10 Pages PDF
Abstract

Let (T,C)(T,C) be a pair consisting of a tree TT and a coloring CC of its vertices. We say that CC is a convex coloring   if, for each color cc, the vertices in TT with color cc induce a subtree of TT. The convex recoloring problem   (of trees) is defined as follows. Given a pair (T,C)(T,C), find a recoloring of a minimum number of vertices of TT such that the resulting coloring is convex. This problem, known to be NP-hard, was motivated by problems on phylogenetic trees.We investigate here the convex recoloring problem on paths, denoted here as CRP. The main result concerns an approximation algorithm for a special case of CRP, denoted here as 22-CRP, restricted to paths in which the number of vertices of each color is at most  22, a problem known to be NP-hard. The best approximation result for CRP was obtained by Moran and Snir in 2007, who showed a 22-approximation algorithm. We show in this paper a 3/23/2-approximation algorithm for 22-CRP and show that its ratio analysis is tight.We also present an integer programming formulation for CRP and discuss some computational results obtained by exploring this formulation.

Related Topics
Physical Sciences and Engineering Computer Science Computational Theory and Mathematics
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