Article ID Journal Published Year Pages File Type
423809 Electronic Notes in Theoretical Computer Science 2008 16 Pages PDF
Abstract

We propose String MultiSet Rewriting (SMSR) as an intermediate language for simulation of biomolecular systems. Higher level formalisms for biological systems description can be translated into SMSR and SMSR descriptions can be simulated by adapting an existing simulator. In this paper we show the translation of one of these formalisms, CLS+, into SMSR, and we prove correctness and completeness of the translation.

Related Topics
Physical Sciences and Engineering Computer Science Computational Theory and Mathematics