Article ID | Journal | Published Year | Pages | File Type |
---|---|---|---|---|
425490 | Future Generation Computer Systems | 2008 | 11 Pages |
Abstract
Even though many useful tools for sequence alignment are available, such as BLAST and PSI-BLAST by NCBI and FASTA by the University of Virginia, a key issue regarding sequence databases is their size, growing at an exponential rate. Grid and parallel computing are crucial techniques to maintain and improve the effectiveness of sequence comparison tools, whilst the Web Services approach may guarantee the interoperability among large collections of programs and data. This paper describes BioGAT, Bioinformatics Grid Alignment Toolkit, that offers optimized brokering and a data management system to exploit various bioinformatics alignment tools wrapped as Web Services in a Grid architecture.
Related Topics
Physical Sciences and Engineering
Computer Science
Computational Theory and Mathematics
Authors
Maria Mirto, Sandro Fiore, Italo Epicoco, Massimo Cafaro, Silvia Mocavero, Euro Blasi, Giovanni Aloisio,