Article ID | Journal | Published Year | Pages | File Type |
---|---|---|---|---|
431063 | Journal of Discrete Algorithms | 2010 | 7 Pages |
Abstract
We present an index that stores a text of length n such that given a pattern of length m, all the substrings of the text that are within Hamming distance (or edit distance) at most k from the pattern are reported in O(m+loglogn+#matches) time (for constant k ). The space complexity of the index is O(n1+ϵ)O(n1+ϵ) for any constant ϵ>0ϵ>0.
Related Topics
Physical Sciences and Engineering
Computer Science
Computational Theory and Mathematics
Authors
Dekel Tsur,