Article ID Journal Published Year Pages File Type
436156 Theoretical Computer Science 2015 17 Pages PDF
Abstract

We study parameterized algorithms and approximation algorithms for the maximum agreement forest problem, which, for two given leaf-labeled trees, is to find a maximum forest that is a subgraph of both trees. The problem was motivated by research in phylogenetics. For parameterized algorithms, while the problem is known to be fixed-parameter tractable for binary trees, it was an open problem whether the problem is still fixed-parameter tractable for general trees. We resolve this open problem by developing an O(3kn)O(3kn)-time parameterized algorithm for general trees. Our techniques on tree structures also lead to a polynomial-time approximation algorithm of ratio 3 for the problem, giving the first constant-ratio approximation algorithm for general trees.

Related Topics
Physical Sciences and Engineering Computer Science Computational Theory and Mathematics
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