Topologically correct reconstruction of tortuous contour forests

Motivated by the need for correct and robust 3D models of neuronal processes, we present a method for reconstruction of spatially realistic and topologically correct models from planar cross sections of multiple objects. Previous work in 3D reconstruction from serial contours has focused on reconstructing one object at a time, potentially producing inter-object intersections between slices. We have developed a robust algorithm that removes these intersections using a geometric approach. Our method not only removes intersections but can guarantee a given minimum separation distance between objects. This paper describes the algorithm for geometric adjustment, proves correctness, and presents several results of our high-fidelity modeling.

► Geometric reconstruction from contours can cause intersections. ► Our algorithm generates topologically correct reconstructions. ► Our algorithm generates geometrically accurate reconstructions.