| Article ID | Journal | Published Year | Pages | File Type |
|---|---|---|---|---|
| 504949 | Computers in Biology and Medicine | 2014 | 6 Pages |
•The HIGDB act as a single access point source for Haemophilus influenzae genomes.•It provides a dynamic interface to execute varied searches for genes and proteins.•The database facilitates the comparative study of H. influenzae genomes.•It allows dynamic viewing of the genomic content of H. influenzae strains.•It aids in the identification of DNA motifs within H. influenzae genomes.
BackgroundHaemophilus influenzae (H. Influenzae) is the causative agent of pneumonia, bacteraemia and meningitis. The organism is responsible for large number of deaths in both developed and developing countries. Even-though the first bacterial genome to be sequenced was that of H. Influenzae, there is no exclusive database dedicated for H. Influenzae. This prompted us to develop the Haemophilus influenzae Genome Database (HIGDB).MethodsAll data of HIGDB are stored and managed in MySQL database. The HIGDB is hosted on Solaris server and developed using PERL modules. Ajax and JavaScript are used for the interface development.ResultsThe HIGDB contains detailed information on 42,741 proteins, 18,077 genes including 10 whole genome sequences and also 284 three dimensional structures of proteins of H. influenzae. In addition, the database provides “Motif search” and “GBrowse”. The HIGDB is freely accessible through the URL: http://bioserver1.physics.iisc.ernet.in/HIGDB/.DiscussionThe HIGDB will be a single point access for bacteriological, clinical, genomic and proteomic information of H. influenzae. The database can also be used to identify DNA motifs within H. influenzae genomes and to compare gene or protein sequences of a particular strain with other strains of H. influenzae.
