Article ID Journal Published Year Pages File Type
505247 Computers in Biology and Medicine 2012 7 Pages PDF
Abstract

A statistical study of cis-regulatory modules (CRMs) is presented based on the estimation of similar-word set distribution. It is observed that CRMs tend to have a fat-tail distribution. A new statistical fat-tail test with two kurtosis-based fatness coefficients is proposed to distinguish CRMs from non-CRMs. As compared with the existing fluffy-tail test, the first fatness coefficient is designed to reduce computational time, making the novel fat-tail test very suitable for long sequences and large database analysis in the post-genome time and the second one to improve separation accuracy between CRMs and non-CRMs. These two fatness coefficients may serve as valuable filtering indexes to predict CRMs experimentally.

Related Topics
Physical Sciences and Engineering Computer Science Computer Science Applications
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