Article ID Journal Published Year Pages File Type
6889551 Telematics and Informatics 2018 10 Pages PDF
Abstract
In order to use medical text for research purposes, it is necessary to de-identify the text for legal and privacy reasons. We report on a pattern matching method to automatically de-identify medical text written in Dutch, which requires a low amount of effort to be hand tailored. First, a selection of Protected Health Information (PHI) categories is determined in cooperation with medical staff. Then, we devise a method for de-identifying all information in one of these PHI categories, that relies on lookup tables, decision rules and fuzzy string matching. Our de-identification method DEDUCE is validated on a test corpus of 200 nursing notes and 200 treatment plans obtained from the University Medical Center Utrecht (UMCU) in the Netherlands, achieving a total micro-averaged precision of 0.814, a recall of 0.916 and a F1-score of 0.862. For person names, a recall of 0.964 was achieved, while no names of patients were missed.
Related Topics
Physical Sciences and Engineering Computer Science Computer Networks and Communications
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