Functional Characterization of DNA Methylation in the Oligodendrocyte Lineage

•Oligodendrocyte-lineage-specific analysis of DNA methylome and transcriptome•No fate switch induced by Dnmt1 ablation in early oligodendrocyte progenitors•DNMT1-dependent regulation of differentiation-specific alternative splicing events•Impaired myelination in Dnmt1 mutants characterized by aberrant ER stress response

SummaryOligodendrocytes derive from progenitors (OPCs) through the interplay of epigenomic and transcriptional events. By integrating high-resolution methylomics, RNA-sequencing, and multiple transgenic lines, this study defines the role of DNMT1 in developmental myelination. We detected hypermethylation of genes related to cell cycle and neurogenesis during differentiation of OPCs, yet genetic ablation of Dnmt1 resulted in inefficient OPC expansion and severe hypomyelination associated with ataxia and tremors in mice. This phenotype was not caused by lineage switch or massive apoptosis but was characterized by a profound defect of differentiation associated with changes in exon-skipping and intron-retention splicing events and by the activation of an endoplasmic reticulum stress response. Therefore, loss of Dnmt1 in OPCs is not sufficient to induce a lineage switch but acts as an important determinant of the coordination between RNA splicing and protein synthesis necessary for myelin formation.

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