Effect of dietary protein supply originating from soybean meal or casein on the intestinal microbiota of piglets

• Dietary protein source and level affect intestinal microbiota in piglets.
• These effects vary between bacterial groups and intestinal sites.
• Soybean protein increased almost all analyzed bacteria in feces compared to casein.
• Ileal lactobacilli linearly increased with increasing crude protein content in the diet.

Dietary composition is a major factor influencing the intestinal microbial ecosystem of pigs. To alleviate weaning-associated disorders, variations in dietary protein supply may beneficially affect microbial composition in the gastrointestinal tract of piglets. A total of 48 piglets, fitted with simple ileal T-cannulas, was used to examine the effect of protein supply of either highly digestible casein or less digestible, fiber-rich soybean meal (SBM) on the composition of the intestinal microbiota. Gene copies of 7 bacteria groups were determined by real-time PCR in ileal digesta and feces. Ileal counts of total eubacteria, the Bacteroides-Prevotella-Porphyromonas group, Enterobacteriaceae and Clostridium Cluster XIVa were higher (P < 0.001) in the casein-based diets. Fecal counts of all analyzed bacterial groups were higher for the SBM-based diets (P < 0.001), apart from Enterobacteriaceae (P < 0.05) which were higher in the casein-based diets. Ileal counts of lactobacilli linearly increased as the crude protein level was increased up to 335 g/kg (P < 0.01). The Bacteroides–Prevotella–Porphyromonas group linearly decreased in ileal samples (P < 0.01) and increased in fecal samples (P < 0.05) as the crude protein level in the SBM-based diet was increased. Both, protein level and protein source may affect intestinal microbial balance. Higher dietary protein levels in combination with diets low in fiber contents might stimulate proliferation of protein fermenting bacteria in piglet's large intestine. Further studies are warranted to clarify, whether this would be associated with intestinal disturbances.