Keywords: PSI BLAST; SVM; Support vector machine; FSVM; Fuzzy support vector machine; Q3; Overall accuracy; SOV; Segment overlap measure; MCC; Matthews correlation coefficient; PSI-BLAST; Position-Specific Iterative BLAST;
مقالات ISI PSI BLAST (ترجمه نشده)
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Keywords: PSI BLAST; Abiotic stress tolerance; Genomics and genetics; Molecular markers; Whole-genome association study; Next-generation sequencing (NGS); FAO; Food & Agricultural organization; NGS; Next-generation sequencing; BAC; Bacterial artificial chromosome; QTL; Quanti
Keywords: PSI BLAST; Coagulation; Homology modelling; PSI-BLAST; Gapped BLAST; SWISS MODEL;
Insights into the carbonic anhydrases and autotrophic carbon dioxide fixation pathways of high CO2 tolerant Rhodovulum viride JA756
Keywords: PSI BLAST; 'C'; carbon; 3-HP; 3-hydroxypropionate; 4-HB; 4-hydroxybutyrate; ACL; ATP-citrate lyase; ADP; adenosine diphosphate; CA; carbonic anhydrase; CBB; Calvin-Benson-bassham; CCL; citryl-CoA lyase; CCM; carbon concentrating mechanism; CCS; citryl-CoA synthe
An in silico study: Novel targets for potential drug and vaccine design against drug resistant H. pylori
Keywords: PSI BLAST; H. pylori; Common proteins; Metabolic pathways; Network analysis; Druggability; Therapeutic targets; CAI; Codon adaptation index; CELLO; subCELlular LOcalization predictor; COGdb; Cluster of orthologous groups database; CP; chokepoint proteins; DEG; Datab
Homology modeling and molecular dynamics simulation of the HIF2α degradation-related HIF2α-VHL complex
Keywords: PSI BLAST; HIF2α; hypoxia-inducible factor 2α; VHL; Von Hippel-Lindau; pVHL; von Hippel Lindau tumor suppressor protein; CODD; C-terminal oxygen-dependent degradation domain; 3D; three-dimensional; ARNT; aryl hydrocarbon receptor nuclear translocator; HRE; hypox
Pan-genome analysis of Clostridium botulinum reveals unique targets for drug development
Keywords: PSI BLAST; C. botulinum; Clostridium botulinum; COG; Clusters of Orthologous Groups of Proteins; WHO; World Health Organization; HSP; high scoring proteins; SWG; Smith-Waterman-Gotoh; BPGA; Bacterial pan Genome Analysis; MLST; multi locus sequence typing; PSI-BL
A multi-subunit based, thermodynamically stable model vaccine using combined immunoinformatics and protein structure based approach
Keywords: PSI BLAST; APC; antigen presenting cells; CTL; cytolytic T-lymphocytes; FASTA; FAST-ALL; HBHA; heparin-binding hemagglutinin; HTL; helper T-lymphocytes; IC50; inhibitory concentration; IEDB-AR; immune epitope database analysis resource; JCAT; Java Codon Adaptation T
Transposition burst of mariner-like elements in the sequenced genome of Rhodnius prolixus
Keywords: PSI BLAST; Transposable elements; Mariner family; Burst of transposition; Speciation; Rhodnius prolixus; BSP; Bayesian Skyline Plot; ESS; Effective Sample Size; HPD; Highest Probability Density; MITE; Miniature Inverted Repeat Transposable Elements; MLE; mariner-lik
Homology modeling, functional annotation and comparative genomics of outer membrane protein H of Pasteurella multocida
Keywords: PSI BLAST; 3D; Three dimensional; BLAST; Basic Local Alignment Search Tool; BLASTp; Protein-BLAST; CDD; Conserved Domains Database; Da; Dalton; DEG; Database of Essential Genes; GO; Gene Ontology; GRAVY; Grand Average of Hydropathy; KAAS; KEGG automatic annotation s
Hsp90/Cdc37 assembly modulates TGFβ receptor-II to act as a profibrotic regulator of TGFβ signaling during cardiac hypertrophy
Keywords: PSI BLAST; Hsp90; Heat shock protein 90; Cdc37; Cell division cycle 37; AngII; Angiotensin II; TGFβ; Transforming growth factor β; ECM; Extracellular matrix; TβR-I; Transforming growth factor β receptor-I; TβR-II; Transforming growth factor β receptor-II; 17AA
Bioinformatics analyses provide insight into distant homology of the Keap1-Nrf2 pathway
Keywords: PSI BLAST; ADT; AutoDock Tools; ARE; antioxidant response element; BLAST; Basic Local Alignment Search Tool; DHSP; Distant Homology Search Pipeline; NTMT; NCBI Taxonomy Mapping Tool; HMM; Hidden Markov Model; HMMER3; HMM-based utility version 3; Keap1; Kelch-like EC
Antarease-like Zn-metalloproteases are ubiquitous in the venom of different scorpion genera
Keywords: PSI BLAST; ADAM; a disintegrin and metalloproteinase; BLAST; basic local alignment search tool; HMM; hidden Markov model; MD; molecular dynamics; NPT; constant-temperature, constant-pressure ensemble; PDB; protein data bank; PSI-BLAST; position-specific iterative BL
SPSSM8: An accurate approach for predicting eight-state secondary structures of proteins
Keywords: PSI BLAST; 8-State secondary structure; SPSSM; 9M-BLAST; PSI-BLAST; CRF;
Methods PaperPRASA: An integrated web server that analyzes protein interaction types
Keywords: PSI BLAST; PPI; protein-protein interaction; PSI-BLAST; Position-Specific Iterative Basic Local Alignment Search Tool; RVKDE; relaxed variable kernel density estimation; Interaction type; Machine learning; Protein-protein interaction; Web server;
Methylerythritol phosphate pathway to isoprenoids: Kinetic modeling and in silico enzyme inhibitions in Plasmodium falciparum
Keywords: PSI BLAST; BLAST; basic local alignment search tool; BLAST-P; protein BLAST; CCC; concentration control coefficient; CDPME; 4-(cytidine 5â²-diphospho)-2-C-methyl-d-erythritol; CDPMEK; 4-(cytidine 5â²-diphospho)-2-C-methyl-d-erythritol kinase; CDPMES; 4-(cytidine 5
Predicted expansion of the claudin multigene family
Keywords: PSI BLAST; TJ, tight junction; AJ, adherens junction; Cldn, claudinClaudin; Tight junction; Epithelial cells; Paracellular barrier; Cell adhesion; PSI-BLAST
Mode of action of parasporin-4, a cytocidal protein from Bacillus thuringiensis
Keywords: PSI BLAST; β-PFT; β-pore-forming toxin; BSA; bovine serum albumin; BSA-PBS; PBS containing 1% BSA, 0.05% sodium azide; CD; circular dichroism; CDC; cholesterol-dependent cytolysin; LDH; lactate dehydrogenase; MTT; 3-(4, 5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetr
The origin of nucleus: Rebuild from the prokaryotic ancestors of ribosome export factors
Keywords: PSI BLAST; REF, Ribosome Export Factor; non-mREF, non-membranous REF; mREF, membranous REF; PSSM, Position-Specific Scoring MatrixEndosymbiosis; Nucleus; Nucleolus; Nucleocytoplasmic transport; PSI-BLAST
Prediction of Subcellular Localization of Eukaryotic Proteins Using Position-Specific Profiles and Neural Network with Weighted Inputs
Keywords: PSI BLAST; subcellular localization; PSI-BLAST; position-specific scoring matrices; weighting function; BP neural network
Primary structure-based function characterization of BRCT domain replicates in BRCA1
Keywords: PSI BLAST; Breast cancer; BRCA1; p53; Domain recognition; Psi-BLAST; Homology
The p100 EBNA-2 coactivator: a highly conserved protein found in a range of exocrine and endocrine cells and tissues in cattle
Keywords: PSI BLAST; nt; nucleotide; aa; amino acid; UTR; untranslated region; PCR; polymerase chain reaction; RACE; rapid amplification of cDNA ends; RT-PCR; reverse transcription polymerase chain reaction; IPTG; isopropyl β-d-1-thiogalactopyranoside; ORF; open reading fram
Searching for hypothetical proteins: Theory and practice based upon original data and literature
Keywords: PSI BLAST; 2-DE; two-dimensional gel electrophoresis; 3D-PSSM; three-dimensional position-specific scoring matrix; ANN; artificial neural networks; BIND; biomolecular interaction network database; BLAST; basic local alignment search tool; CAMPASS; Cambridge database