Visualization and quantification of cardiac mitochondrial protein clusters with STED microscopy

The visualization and quantification of mitochondria-associated proteins with high power microscopy methods is of particular interest to investigate protein architecture in this organelle. We report the usage of a custom-made STimulated Emission Depletion (STED) fluorescence nanoscope with ~ 30 nm lateral resolution for protein mapping of Percoll-purified viable mitochondria from murine heart. Using this approach, we were able to quantify and resolve distinct protein clusters within mitochondria; specifically, cytochrome c oxidase subunit 2 is distributed in clusters of ~ 28 nm; whereas the voltage dependent anion channel 1 displays three size distributions of ~ 33, ~ 55 and ~ 83 nm.