کد مقاله | کد نشریه | سال انتشار | مقاله انگلیسی | نسخه تمام متن |
---|---|---|---|---|
5136420 | 1494003 | 2017 | 9 صفحه PDF | دانلود رایگان |
عنوان انگلیسی مقاله ISI
Sample preparation for detection of low abundance proteins in human plasma using ultra-high performance liquid chromatography coupled with highly accurate mass spectrometry
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کلمات کلیدی
HER2PSAIAApro-BNPDDAAmI - AMISample preparation - آماده سازی نمونهProstate specific antigen - آنتی ژن اختصاصی پروستاتAcute myocardial infarction - سکته قلبیMars - سیاره مریخBiomarkers - نشانگر زیستی یا بیومارکرHuman plasma - پلاسمای انسانیpro-brain natriuretic peptide - پپتید ناتریورتیک پرو مغزdata-dependent acquisition - کسب اطلاعات وابسته به داده هاLow abundance proteins - کمبود پروتئین هاHuman epidermal growth factor receptor 2 - گیرنده عامل فاکتور رشد اپیدرمی انسان 2iodoacetamide - یووداکتامید
موضوعات مرتبط
مهندسی و علوم پایه
شیمی
شیمی آنالیزی یا شیمی تجزیه
پیش نمایش صفحه اول مقاله
چکیده انگلیسی
Proteomics is a valuable approach to discover biomarkers in human plasma for early diagnosis. However, detection of biomarkers in the plasma is still challenging because of its large protein content. In our study, we established albumin/IgG depletion methods for identification of low abundance proteins using two commercial kits with additional buffer conditions and various concentrations of cold acetone. Trypsin digestion, desalting, and data-dependent acquisition were also optimized. More than 80% depletion of albumin/IgG was achieved with two commercial kits and 98% depletion of albumin was obtained with 70% cold acetone. Recovery of four reference proteins, BNP (47-76), insulin, cytochrome c, and ubiquitin was obtained in all optimized methods. The best recovery of reference proteins was obtained using the ProteoExtract albumin/IgG removal kit with buffer A (61%-106%). After cold acetone precipitation, three reference proteins were recovered more than 48% except ubiquitin (12%). The number of identified proteins by Mascot was 28, 35, 17, and 34 for ProteoExtract, ProteoPrep, 70%, and 50% cold acetone, respectively. Furthermore, optimized methods detected MS/MS fragmentation patterns of elevated BNP in patient samples with cardiac disease. Our study provides the conditions for efficient biomarker discovery by minimal removing of high abundant proteins.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Journal of Chromatography B - Volume 1060, 15 August 2017, Pages 272-280
Journal: Journal of Chromatography B - Volume 1060, 15 August 2017, Pages 272-280
نویسندگان
Yunseo Seong, Young Sook Yoo, Hafeza Akter, Min-Jung Kang,