In silico ADME modelling 2: Computational models to predict human serum albumin binding affinity using ant colony systems

Modelling of in vitro human serum albumin (HSA) binding data of 94 diverse drugs and drug-like compounds is performed to develop global predictive models that are applicable to the whole medicinal chemistry space. For this aim, ant colony systems, a stochastic method along with multiple linear regression (MLR), is employed to exhaustively search and select multivariate linear equations, from a pool of 327 molecular descriptors. This methodology helped us to derive optimal quantitative structure–property relationship (QSPR) models based on five and six descriptors with excellent predictive power. The best five-descriptor model is based on Kier and Hall valence connectivity index—Order 5 (path), Auto-correlation descriptor (Broto-Moreau) weighted by atomic masses—Order 4, Auto-correlation descriptor (Broto-Moreau) weighted by atomic polarizabilities—Order 5, AlogP98, SklogS (calculated buffer water solubility) [R = 0.8942, Q = 0.86790, F = 62.24 and SE = 0.2626]; the best six-variable model is based on Kier and Hall valence connectivity index of Order 3 (cluster), Auto-correlation descriptor (Broto-Moreau) weighted by atomic masses—Order 4, Auto-correlation descriptor (Broto-Moreau) weighted by atomic polarizabilities—Order 5, Atomic-Level-Based AI topological descriptors—AIdsCH, AlogP98, SklogS (calculated buffer water solubility) [R = 0.9128, Q = 0.89220, F = 64.09 and SE = 0.2411]. From the analysis of the physical meaning of the selected descriptors, it is inferred that the binding affinity of small organic compounds to human serum albumin is principally dependent on the following fundamental properties: (1) hydrophobic interactions, (2) solubility, (3) size and (4) shape. Finally, as the models reported herein are based on computed properties, they appear to be a valuable tool in virtual screening, where selection and prioritisation of candidates is required.

Computational models for the prediction of human serum albumin binding affinity are derived using 94 diverse compounds, 327 molecular descriptors, ant colony systems—a stochastic method and multiple linear regressions. Validation tests demonstrate that the models possess excellent predictive power and can be applied to whole medicinal chemical space for virtual screening studies. Interpretation of the physical meaning of the selected descriptors suggests that human serum albumin binding affinity is dependent principally on hydrophobic interactions, solubility, size and shape.Figure optionsDownload as PowerPoint slide