کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
10358661 868613 2005 17 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
Dual-level parallelism for ab initio molecular dynamics: Reaching teraflop performance with the CPMD code
موضوعات مرتبط
مهندسی و علوم پایه مهندسی کامپیوتر نرم افزارهای علوم کامپیوتر
پیش نمایش صفحه اول مقاله
Dual-level parallelism for ab initio molecular dynamics: Reaching teraflop performance with the CPMD code
چکیده انگلیسی
We show teraflop performance of the fully featured ab initio molecular dynamics code CPMD on an IBM pSeries 690 cluster. A mixed distributed-memory, coarse-grained parallel approach using the MPI library and shared-memory, fine-grained parallelism using OpenMP directives is used to optimally map the algorithms on the available hardware. The top performance achieved is ≈20% of the peak performance and an estimated parallel efficiency of ≈45% on 1024 processors for a system of 1000 atoms. The main limiting factor of parallel efficiency was found to be the latency of the interconnect.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Parallel Computing - Volume 31, Issue 1, January 2005, Pages 1-17
نویسندگان
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