کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
443429 692722 2013 11 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
Softened electrostatic molecular potentials
موضوعات مرتبط
مهندسی و علوم پایه شیمی شیمی تئوریک و عملی
پیش نمایش صفحه اول مقاله
Softened electrostatic molecular potentials
چکیده انگلیسی

Electrostatic molecular potentials (EMPs) are studied from two points of view. First, a softened EMP (SEMP) approach is proposed, consisting in the substitution of a positive point charge as the entity with which an electronic density function (DF) interacts electrostatically to generate a classical EMP for a Gaussian charge distribution. Second, the performance of this SEMP approach under the Atomic Shell Approximation (ASA) is described and compared with classical EMP at the same ASA level. Several sample applications are presented to describe the general features of this new method of studying electrostatic interactions in molecules. The net result is a family of SEMPs that encompass EMPs as special cases but do not possess their infinite discontinuities. The features of SEMPs are quite similar to those of EMPs distant from nuclei, and the absence of infinity values makes them good candidates to be employed in molecular similarity calculations.

Figure optionsDownload high-quality image (107 K)Download as PowerPoint slideHighlights
► A method to override systematic poles is described.
► It constitutes a method to simplify EMP visualizations.
► Within the ASA, the calculations are simple and only require the evaluation of the error function.
► The molecular surface can be easily treated a posteriori with other methods and purposes (for visualization, gridding, integration, similarity comparisons, etc.).

ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Journal of Molecular Graphics and Modelling - Volume 39, February 2013, Pages 39–49
نویسندگان
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