کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
4967825 1449377 2017 17 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
Estimating the speed-up of adaptively restrained Langevin dynamics
موضوعات مرتبط
مهندسی و علوم پایه مهندسی کامپیوتر نرم افزارهای علوم کامپیوتر
پیش نمایش صفحه اول مقاله
Estimating the speed-up of adaptively restrained Langevin dynamics
چکیده انگلیسی
We consider Adaptively Restrained Langevin dynamics, in which the kinetic energy function vanishes for small velocities. Properly parameterized, this dynamics makes it possible to reduce the computational complexity of updating inter-particle forces, and to accelerate the computation of ergodic averages of molecular simulations. In this paper, we analyze the influence of the method parameters on the total achievable speed-up. In particular, we estimate both the algorithmic speed-up, resulting from incremental force updates, and the influence of the change of the dynamics on the asymptotic variance. This allows us to propose a practical strategy for the parameterization of the method. We validate these theoretical results by representative numerical experiments.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Journal of Computational Physics - Volume 336, 1 May 2017, Pages 412-428
نویسندگان
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