Keywords: دینامیک سازگار; AD; Alzheimer's disease; DTT; 1,4-dithio-d-threitol; EGTA; Ethylene glycol-bis(2-aminoethylether)-N,N,Nâ²,Nâ²-tetraacetic acid; IDP; Intrinsically disordered protein; IPTG; Isopropyl β-d-1-thiogalactopyranoside; MES; 2-(N-morpholino) ethanesulfonic aci
مقالات ISI دینامیک سازگار (ترجمه نشده)
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Keywords: دینامیک سازگار; Friedreich's ataxia; Conformational dynamics; Backbone motions; Protein engineering; CPMG; Carr-Purcell-Meiboom-Gill; CTR; C-terminal region; FXN; frataxin; hnNOE; heteronuclear 1H-15N NOE; HSQC; heteronuclear single quantum coherence; Rex; contribu
Keywords: دینامیک سازگار; Chemical exchange; Conformational dynamics; Kinetics; Ligand binding; Molecular dynamics simulation; Nuclear magnetic resonance spectroscopy; Spin relaxation;
Keywords: دینامیک سازگار; Formamide; Quantum chemistry; Excited electronic states; Conformational dynamics;
Keywords: دینامیک سازگار; intramembrane proteolysis/protease; transmembrane helix; presenilin; γ-secretase; rhomboid; conformational dynamics
The effect of ADF/cofilin and profilin on the dynamics of monomeric actin
Keywords: دینامیک سازگار; Actin; Cofilin; Profilin; Conformational dynamics; Fluorescence; Calorimetry;
A revisit of the conformational dynamics of SNARE protein rYkt6
Keywords: دینامیک سازگار; Conformational dynamics; Ykt6; smFRET; Lipid regulation;
Deciphering the role of dimer interface in intrinsic dynamics and allosteric pathways underlying the functional transformation of DNMT3A
Keywords: دینامیک سازگار; Conformational dynamics; Allosteric communication; Elastic network models, network theory, coevolution analysis;
Dynamics-based community analysis and perturbation response scanning of allosteric interaction networks in the TRAP1 chaperone structures dissect molecular linkage between conformational asymmetry and sequential ATP hydrolysis
Keywords: دینامیک سازگار; Hsp90 chaperones; Conformational dynamics; Allosteric interactions; Residue interaction networks; Community analysis; Perturbation response scanning;
Characterization of the interaction interface and conformational dynamics of human TGIF1 homeodomain upon the binding of consensus DNA
Keywords: دینامیک سازگار; TG interacting factor-1; DNA recognition; Interaction interface; Conformational dynamics; NMR spectroscopy;
The effect of mutations in the lid region of Thermomyces lanuginosus lipase on interactions with triglyceride surfaces: A multi-scale simulation study
Keywords: دینامیک سازگار; Molecular dynamics; Lipase; Conformational dynamics; Surface interactions; Mutagenesis; Triglyceride surfaces;
Motions of the SecA protein motor bound to signal peptide: Insights from molecular dynamics simulations
Keywords: دینامیک سازگار; Protein secretion; SecA; Signal peptide; Conformational dynamics; Hydrogen bonding; H-bond maps;
Substrate binding interferes with active site conformational dynamics in endoglucanase Cel5A from Thermobifida fusca
Keywords: دینامیک سازگار; Molecular dynamics; Catalysis; Conformational dynamics; Cellulase;
Utilizing tagged paramagnetic shift reagents to monitor protein dynamics by NMR
Keywords: دینامیک سازگار; 3-FPhe; 3-fluorophenylalanine; CaM; calmodulin; CPMG; Carr-Purcell-Meiboom-Gill; HSQC; heteronuclear single quantum coherence; DEER; double electron-electron resonance; CEST; chemical exchange saturation transfer; PRE; paramagnetic relaxation effect; PCS;
NMR structure, conformational dynamics, and biological activity of PsDef1 defensin from Pinus sylvestris
Keywords: دینامیک سازگار; Scotts pine defensin; Plant defensin; NMR structure; Conformational dynamics; Antibacterial activity; Amylase inhibition;
Structural dynamics of Giα protein revealed by single molecule FRET
Keywords: دینامیک سازگار; Heterotrimeric G protein; smFRET; Conformational dynamics; GDP binding;
State transition analysis of spontaneous branch migration of the Holliday junction by photon-based single-molecule fluorescence resonance energy transfer
Keywords: دینامیک سازگار; Single-molecule measurement; FRET; Conformational dynamics; Variational Bayes; Hidden Markov model; Single photon counting;
NMR structure and conformational dynamics of AtPDFL2.1, a defensin-like peptide from Arabidopsis thaliana
Keywords: دینامیک سازگار; AtPDFL2.1; Plant defensins; Solution NMR; Antifungal activity; Three-dimensional structure; Conformational dynamics;
Trehalose matrix effects on charge-recombination kinetics in Photosystem I of oxygenic photosynthesis at different dehydration levels
Keywords: دینامیک سازگار; Chl; chlorophyll; DCPIP; 2,6-dichlorophenol-indophenol; DM; n-dodecyl-β-d-maltoside; PS I(tr); trimeric Photosystem I; RC; bacterial reaction center; RT; room temperature; Oxygenic photosynthesis; Conformational dynamics; Trehalose glassy matrices; Charg
Different conformational dynamics of β-arrestin1 and β-arrestin2 analyzed by hydrogen/deuterium exchange mass spectrometry
Keywords: دینامیک سازگار; β-Arrestin; Pre-activation; Conformational dynamics; Hydrogen/deuterium exchange mass spectrometry
Dynamics differentiate between active and inactive inteins
Keywords: دینامیک سازگار; Mini-intein; Protein splicing; Enzyme dynamics; Allostery; Conformational dynamics; Non-linear Arrhenius plot
Molecular basis of the binding of YAP transcriptional regulator to the ErbB4 receptor tyrosine kinase
Keywords: دینامیک سازگار; WW-ligand thermodynamics; PPXY motifs; Structural analysis; Conformational dynamics; ErbB4; erythroblastic (Erb) leukemia viral oncogene homolog B4; ITC; isothermal titration calorimetry; ITCH; ubiquitin ligase itchy homolog; LIC; ligation-independent clo
Conformational dynamics of human FXR-LBD ligand interactions studied by hydrogen/deuterium exchange mass spectrometry: Insights into the antagonism of the hypolipidemic agent Z-guggulsterone
Keywords: دینامیک سازگار; HDX; hydrogen/deuterium exchange; LC-ESI-MS; liquid chromatography electrospray ionization mass spectrometry; FXR-LBD; farnesoid X receptor ligand binding domain; LBC; ligand binding cavity; CDCA; chenodeoxycholic acid; GG; Z-guggulsterone; 6ECDCA; 6-et
Promiscuous and specific recognition among ephrins and Eph receptors
Keywords: دینامیک سازگار; Eph receptor tyrosine kinase; Conformational selection; Induced fit; Protein–protein interaction; Energy landscape; Conformational dynamics
The other side of the coin: Functional and structural versatility of ADF/cofilins
Keywords: دینامیک سازگار; Actin; Cytoskeleton; ADF-H domain; ADF/cofilin; Nucleotide; Conformational dynamics;
Effects of dehydration on light-induced conformational changes in bacterial photosynthetic reaction centers probed by optical and differential FTIR spectroscopy
Keywords: دینامیک سازگار; BChl; bacteriochlorophyll; FTIR; Fourier transform infrared; LDAO; lauryldimethylamine N-oxide; P; bacteriochlorophyll dimer; QA; primary quinone; QB; secondary quinone; Rb.; Rhodobacter; RC; reaction center; Difference FTIR spectroscopy; Protein hydratio
Emerging computational approaches for the study of protein allostery
Keywords: دینامیک سازگار; Allostery; Simulation; Molecular dynamics; Conformational dynamics
Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants
Keywords: دینامیک سازگار; GAP; GTPase-activating protein; GppNHp; guanosine 5â²-(β,γ-imido)triphosphate; RBD; Ras-binding domain; WT; Wild type; rms; root mean square; Ras; Small GTPases; Oncogene; Crystal structure; Conformational dynamics;
Light scattering study of human serum albumin in pre-denaturation: Relation to dynamic transition in water at 42 °C
Keywords: دینامیک سازگار; Dynamic light scattering; Conformational dynamics; Human serum albumin; Hydrogen bonds; Hydrodynamic radius;
Conformational dynamics of the interaction of Escherichia coli endonuclease VIII with DNA substrates
Keywords: دینامیک سازگار; 2-aPu, 2-aminopurine; AP, apurinic/apyrimidinic site; BER, base excision repair; DHU, 5,6-dihydrouracil; ODN, oligodeoxyribonucleotide; THF, (3-hydroxytetrahydrofuran-2-yl)methyl phosphateBase excision repair; DNA glycosylases; Conformational dynamics; En
Conformational dynamics of CYP3A4 demonstrate the important role of Arg212 coupled with the opening of ingress, egress and solvent channels to dehydrogenation of 4-hydroxy-tamoxifen
Keywords: دینامیک سازگار; P450; cytochrome P450 enzymes; 4OHT; 4-hydroxy-tamoxifen; SOM; sites of metabolism; RALX; raloxifene; P450; 4-Hydroxyâtamoxifen; Dehydrogenation; Molecular dynamics; Docking; Conformational dynamics;
Binding properties and conformational dynamics of reversible amidines with DNA from a theoretical view
Keywords: دینامیک سازگار; Reversible amidine; Binding properties; Conformational dynamics; Anticancer; Molecular dynamics simulation;
Structure and conformational dynamics of the dicyclopropyl ketone in the ground electronic state
Keywords: دینامیک سازگار; Dicyclopropyl ketone; Nonrigid molecule; Conformational dynamics; Valence focal-point analysis; Torsion transition energies; Coupling of torsion motions;
Role of protein motions on proton transfer pathways in human carbonic anhydrase II
Keywords: دینامیک سازگار; Proton transfer; Pathway; Conformational dynamics; Carbonic anhydrase
Structure and conformational dynamics of oxiranecarboxaldehyde in the ground and excited electronic states
Keywords: دینامیک سازگار; Oxiranecarboxaldehyde; Nonrigid molecules; Conformational dynamics; Excited electronic states; Torsion and inversion transition energies; Large-amplitude motions coupling;
Single-pair FRET experiments on nucleosome conformational dynamics
Keywords: دینامیک سازگار; Nucleosome; Conformational dynamics; Single-pair FRET; DNA breathing
Molecular structure, conformational preferences and vibrational analysis of 2-hydroxystyrene: A computational and spectroscopic research
Keywords: دینامیک سازگار; 2-Hydroxystyrene; Molecular structure; Conformational dynamics; Topological analysis; Infrared and Raman spectra; Vibrational analysis;
Voltage clamp fluorometry: Combining fluorescence and electrophysiological methods to examine the structure-function of the Na+/K+-ATPase
Keywords: دینامیک سازگار; Sodium pump; Conformational dynamics; Structural alignment; Fluorescence resonance energy transfer; Two electrode voltage clamp;
Structure and conformational dynamics of the cyclopropyl methyl ketone molecule in the ground electronic state
Keywords: دینامیک سازگار; Cyclopropyl methyl ketone; Nonrigid molecule; Conformational dynamics; Valence focal-point analysis; Torsion transition energies; Coupling of torsion motions;
A structural framework for understanding the multifunctional character of lactoferrin
Keywords: دینامیک سازگار; Lactoferrin structure; Iron binding; Conformational dynamics; Antibacterial activity; Glycosylation
Structure and dynamics of acrolein in 1,3(Ï,Ï*) excited electronic states: A quantum-chemical study
Keywords: دینامیک سازگار; Acrolein; Excited electronic states; Conformational dynamics; Internal rotation; Potential energy surface; Molecular vibrational coupling;
Structural dynamics and folding of β-lactoglobulin probed by heteronuclear NMR
Keywords: دینامیک سازگار; β-Lactoglobulin; Tanford transition; Ligand binding; Conformational dynamics; Protein folding; Heteronuclear NMR;
Single-molecule fluorescence studies from a bioinorganic perspective
Keywords: دینامیک سازگار; Single-molecule fluorescence spectroscopy; Bioinorganic chemistry; FRET; Fluorescence quenching via energy transfer; Fluorescence quenching via electron transfer; Oxygen binding; Redox; Metalloprotein folding; Conformational dynamics; Catalysis; Metalloch
HF, MP2 and DFT calculations and spectroscopic study of the vibrational and conformational properties of N-diethylendiamine
Keywords: دینامیک سازگار; HF, MP2 and DFT/B3LYP calculations; Raman spectroscopy; N-Diethylendiamine; Conformational dynamics; Phase transition
Stopped-flow fluorescence resonance energy transfer for analysis of nucleosome dynamics
Keywords: دینامیک سازگار; Chromatin; Histones; LexA protein; DNA; Nucleosome reconstitution; FRET; Kinetics; Cy-dye labeling; Conformational dynamics; Site exposure
Multistate conformational model of a single LH2 complex: Quantitative picture of time-dependent spectral fluctuations
Keywords: دینامیک سازگار; Photosynthetic light-harvesting; Single molecule; Delocalization; Exciton-phonon coupling; Redfield theory; Conformational dynamics;
C-terminus of a long α-neurotoxin is highly mobile when bound to the nicotinic acetylcholine receptor: A time-resolved fluorescence anisotropy approach
Keywords: دینامیک سازگار; α-Cobratoxin; Nicotinic acetylcholine receptor; Conformational dynamics; Time-resolved fluorescence anisotropy;
The central loop of Escherichia coli glutamine synthetase is flexible and functionally passive
Keywords: دینامیک سازگار; Conformational dynamics; Protein engineering; Pyrene fluorescence; Exo-site; Tuberculosis;
A hierarchy of functionally important relaxations within myoglobin based on solvent effects, mutations and kinetic model
Keywords: دینامیک سازگار; Conformational dynamics; Diffusion; Geminate recombination; Myoglobin; Sol-gel; Trehalose; Relaxation;