Keywords: Cerebral ischemia; Retrotransposons; Intracisternal A-particle (IAP); Long interspersed nucleotide element 1 (L1); DNA methylation;
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RTFAdb: A database of computationally predicted associations between retrotransposons and transcription factors in the human and mouse genomes
Keywords: Retrotransposons; Transcription factors; Gene regulation; Mammalian genomes; Bioinformatics;
Internal validation of two new retrotransposons-based kits (InnoQuant® HY and InnoTyper® 21) at a forensic lab
Keywords: InnoQuant® HY; InnoTyper® 21; Internal validation; Forensic analysis; Retrotransposons;
Noncoding RNAs: Stress, Glucocorticoids, and Posttraumatic Stress Disorder
Keywords: Glucocorticoids; Long-noncoding RNA; MicroRNA; Noncoding RNA; PTSD; Retrotransposons; Stress; TBI;
SVA retrotransposons as potential modulators of neuropeptide gene expression
Keywords: Gene regulation; Retrotransposons; SVA; Evolution; Polymorphism; TRPV1/V3;
Identification and characterization of mobile genetic elements LINEs from Brassica genome
Keywords: aa; amino acids; BAC; bacterial artificial chromosomes; Bo; Brassica oleracea; Bp; base pair; Br; Brassica rapa; CDD; conserved domain database; CTAB; cetyltrimethylammonim bromide; Cv; cultivar; DIRs; Dictyostelium intermediate repeat sequence; DNA; Deox
iPBS retrotransposons ‘A Universal Retrotransposons’ now in molecular phylogeny of fungal pathogens
Keywords: iPBS; Retrotransposons; Fungi; Genetic diversity
Abundant and Altered Expression of PIWI-Interacting RNAs during Cardiac Hypertrophy
Keywords: Cardiac hypertrophy; Small RNA deep sequencing; Small non-coding RNA; piRNA; Retrotransposons
The canine X chromosome is a sink for canine endogenous retrovirus transposition
Keywords: Transposable elements; Methylation; Domestication; Canine endogenous retrovirus; Canid genome evolution; Retrotransposons
DNA Editing by APOBECs: A Genomic Preserver and Transformer
Keywords: AID; APOBEC; retrotransposons; DNA editing; C-to-U editing; genome evolution
Inter-primer binding site retrotransposon and inter-simple sequence repeat diversity among wild Lens species
Keywords: Retrotransposons; Wild species; Lentil; Genetic resources; Taxonomy; Turkey
DNA based iPBS-retrotransposon markers for investigating the population structure of pea (Pisum sativum) germplasm from Turkey
Keywords: Diversity; Genetic resources; Landraces; Pea; Retrotransposons; Turkey
Retrotransposons and piRNA: The missing link in central nervous system
Keywords: Central nervous system; Non-coding RNAs; PIWI; piRNAs; Retrotransposons
De novo LINE-1 retrotransposition in HepG2 cells preferentially targets gene poor regions of chromosome 13
Keywords: Long interspersed nuclear element-1 (Line-1/L1); Retrotransposons; HepG2; Fluorescence in situ hybridization; Chromosome 13
Impact of an intragenic retrotransposon on the structural integrity and evolution of a major isoprenoid biosynthesis pathway gene in Hevea brasiliensis
Keywords: Farnesyl diphosphate synthase; Hevea brasiliensis; Introns; Isoprenoid biosynthesis; Retrotransposons; SNPs;
ReviewTransposable elements domesticated and neofunctionalized by eukaryotic genomes
Keywords: Transposable elements; Retrotransposons; DNA transposons; Gene domestication; Speciation;
Reprogramming of the HepG2 genome by long interspersed nuclear element-1
Keywords: Epithelial-to-mesenchymal transition; Long interspersed nuclear element-1; Genetic reprogramming; Retrotransposons; Reverse transcriptase
Retrotransposon insertions in rice gene pairs associated with reduced conservation of gene pairs in grass genomes
Keywords: Gene pairs; Retrotransposons; Conservation; Rearrangements; Grass genomes
Phylogeny, integration and expression of sigma virus-like genes in Drosophila
Keywords: NIRV; Rhabdovirus; Virus-host interaction; Retrotransposons; Genome evolution; Paleovirology;
Boty-like retrotransposons in the filamentous fungus Botrytis cinerea contain the additional antisense gene brtn
Keywords: Botrytis cinerea; Data mining; Long-terminal repeat; Retrotransposons; Sclerotinia sclerotiorum
Retrotransposon-specific DNA hypomethylation and two-step loss-of-imprinting during WW45 haploinsufficiency-induced hepatocarcinogenesis
Keywords: WW45; Cancer epigenetics; Liver cancer; Tumorigenesis; DNA methylation; Repressive histone modification; Activating histone modification; H19 ICR; Retrotransposons; Mouse modelsWW45, 45-kDa WW domain-containing protein; ICR, imprinting control region; Igf
Genomics of Biotrophic, Plant-infecting Plasmodiophorids Using In Vitro Dual Cultures
Keywords: callus; genomic sequence; Plasmodiophora; powdery scab; retrotransposons; Spongospora.
Association of an allele on chromosome 9 and abdominal aortic aneurysm
Keywords: Abdominal aortic aneurysm; Risk locus; Retrotransposons
Bursts of transposition from non-long terminal repeat retrotransposon families of the RTE clade in Schistosoma mansoni
Keywords: Schistosoma mansoni; Schistosoma japonicum; Retrotransposons; Genome;
Genetic diversity of Ty1-copia retrotransposons in a wild species of Cucumis (C. hystrix)
Keywords: LTR, long terminal repeat; ORF, open reading frame; PCR, polymerase chain reaction; RT, reverse transcriptase; RT-PCR, reverse transcription PCR; TE, transposable elementCucumis hystrix; Retrotransposons; Reverse transcriptase; Heterogeneity; Transcriptio
Meiosis and retrotransposon silencing during germ cell development in mice
Keywords: Mouse; Germ cell; Oogenesis; Spermatogenesis; Meiosis; Retrotransposons
Guinea pig ID-like families of SINEs
Keywords: GPIDL; guinea pig ID-like; LINE; long interspersed DNA element; SINE; short interspersed DNA element; Genome evolution; ID elements; Retrotransposons; Rodent genomes; SINEs;
Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes
Keywords: CNEs, conserved non-coding elements; SINEs, short interspersed elements; LINEs, long interspersed element; MIR, mammalian interspersed repeat; Fgf8, Fibroblast growth factor 8; Satb2, SATB homeobox 2SINEs; Conserved non-coding elements; Retrotransposons;
The heterochromatic copies of the LTR retrotransposons as a record of the genomic events that have shaped the Drosophila melanogaster genome
Keywords: LTR; long terminal repeats; TE; transposable element.; Transposable elements; Retrotransposons; Heterochromatin; Drosophila melanogaster;
Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons
Keywords: LINE-1 or L1, long interspersed element-1; UTR, untranslated region; ORF, open reading frame; Pt, Pan troglodytes-specific; Hs, Homo sapiens-specific; myrs, million years.L1 elements; Retrotransposons; Human; Chimpanzee; Species-specific; Polymorphism
DNA-directed DNA Polymerase and Strand Displacement Activity of the Reverse Transcriptase Encoded by the R2 Retrotransposon
Keywords: RT, reverse transcriptase; LTR, long terminal repeat; TPRT, target primed reverse transcription; EN, endonuclease; dsDNA, double-stranded DNA; ssDNA, single-stranded DNA; MMLV, murine Moloney leukemia virusreverse transcriptase; retrotransposons; processi
Comparative genomics: From genotype to disease phenotype in the leishmaniases
Keywords: Leishmania; Comparative genomics; Disease phenotype; Retrotransposons; RNAi;
Differential expression of immune-related genes and transposable elements in black tiger shrimp (Penaeus monodon) exposed to a range of environmental stressors
Keywords: Penaeus monodon; Retrotransposons; Shrimp immunity; Suppression subtractive hybridization; Stress response
Estimating the retrotransposition rate of human Alu elements
Keywords: RR, retrotransposition rate; L1, LINE-1; HGMD, Human Gene Mutation DatabaseSINEs; Retrotransposons; Mobile elements
Recently integrated Alu retrotransposons are essentially neutral residents of the human genome
Keywords: My, million years.Alu elements; SINEs; Retrotransposons; Human; Recently integrated subfamilies; Neutral evolution
Characterization of LST-R533: Uncovering a novel repetitive element in Leishmania
Keywords: Leishmania; Genome analysis; Repetitive sequences; LST-R533; Retrotransposons
An RNA-centered view of eukaryotic cells
Keywords: Introns; Reverse transcriptase; Retrotransposons; RNA-mediated DNA evolution; Neural networks, Agent-based modeling;
Recombination between retrotransposons as a source of chromosome rearrangements in the yeast Saccharomyces cerevisiae
Keywords: Yeast; Retrotransposons; Chromosome translocations; Ty elements;
Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals
Keywords: BAC mapping; MAT locus; Retrotransposons; rRNA unit; Sex chromosome; Ustilago hordei
A complex gene cluster for indole-diterpene biosynthesis in the grass endophyte Neotyphodium lolii
Keywords: Neotyphodium lolii; Indole diterpenes; Lolitrem B; ltm gene clusters; Retrotransposons; Penicillium paxilli; LTM locus
Automated characterization of potentially active retroid agents in the human genome
Keywords: LINE; long interspersed nuclear element; HERV; human endogenous retrovirus; RT; reverse transcriptase; GPS; Genome Parsing Suite; Endogenous retroviruses; Retrotransposons; Retroposons; Retroid; Repetitive elements; Genome Parsing Suite software;