Keywords: rRNA، RNA ریبوزومی; LTM, longissimus thoracis muscle; rRNA, ribosomal RNA; DEGs, differentially expressed genes; IACUC, Institutional Animal Care and Use Committee; SAM, Significant Analysis of Microarray; GO, Gene Ontology; qRT-PCR, quantitative real-time PCR; GEO, Gene Exp
مقالات ISI rRNA، RNA ریبوزومی (ترجمه نشده)
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Keywords: rRNA، RNA ریبوزومی; UTR, untranslated region; rRNA, ribosomal RNA; Fluc, firefly luciferaseLeishmania donovani; Expression vector; Ribosomal RNA promoter; Green fluorescent protein
Keywords: rRNA، RNA ریبوزومی; Gastrointestinal; HMP; Lumen; Metagenomics; Microbe; MucosaGI, gastrointestinal; HGC, high gene count; LGC, low gene count; rRNA, ribosomal RNA
The complete mitochondrial genomes of two Atlantic spiny rats, genus Trinomys (Rodentia: Echimyidae), from low-pass shotgun sequencing
Keywords: rRNA، RNA ریبوزومی; A, adenosine; bp, base pair(s); C, cytidine; cytb, cytochrome b; G, guanosine; ML, maximum likelihood; mt, mitochondrial; N, any nucleoside; PCGs, protein coding genes; rRNA, ribosomal RNA; RSCU, relative synonymous codon usage; T, thymidine; tRNA, transf
Effect of cheY deletion on growth and colonization in a Haemophilus parasuis serovar 13 clinical strain EP3
Keywords: rRNA، RNA ریبوزومی; NAD, nicotinamide-adenine dinucleotide; PA, polyacrylamide; PAGE, PA-gel electrophoresis; rRNA, ribosomal RNA; SDS, sodium dodecyl sulfate; kDa, kilodalton(s); Kan, kanamycin; ORF, open reading frameHaemophilus parasuis; cheY; Serum resistance; Biofilm fo
A unique combination of rare mitochondrial ribosomal RNA variants affects the kinetics of complex I assembly
Keywords: rRNA، RNA ریبوزومی; mtDNA, mitochondrial DNA; rRNA, ribosomal RNA; CI, respiratory complex I; LHON, Leber’s Hereditary Optic Neuropathy; MELAS, Myoclonic Epilepsy with Lactic Acidosis and Stroke-like episodes; 2D BN/SDS-PAGE, two dimensional Blue Native sodium-dodecyl sulpha
The acclimation of Chlorella to high-level nitrite for potential application in biological NOx removal from industrial flue gases
Keywords: rRNA، RNA ریبوزومی; bio-DeNOx, biological NOx removal; FACHB, freshwater algae culture collection of the institute of hydrobiology; N, nitrogen; NOx, nitrogen oxides; NPQ, non-photochemical quenching; PSII, photosystem II; rRNA, ribosomal RNA; PCR, polymerase chain reactionA
Complete mitochondrial genome of Pycnonotus xanthorrhous (Passeriformes, Pycnonotidae) and phylogenetic consideration
Keywords: rRNA، RNA ریبوزومی; Pycnonotus xanthorrhous; Pycnonotidae; Mitochondrial genome; Phylogenetic analysis; Gene orderMitogenome, mitochondrial genome; PCGs, protein-coding genes; tRNA, transfer RNA; rRNA, ribosomal RNA; CR, control region; ORF, open reading frame; AIC, Akaike i
Repetitive transpositions of mitochondrial DNA sequences to the nucleus during the radiation of horseshoe bats (Rhinolophus, Chiroptera)
Keywords: rRNA، RNA ریبوزومی; mt, mitochondria (l); Myr, million years; rRNA, ribosomal RNA; tRNA, transfer RNA; ND1, NADH dehydrogenase subunit 1; ND2, NADH dehydrogenase subunit 2; ND3, NADH dehydrogenase subunit 3; ND4L, NADH dehydrogenase subunit; ND4, NADH dehydrogenase subunit 4
Characterization of the complete mitogenomes of two Neoscona spiders (Araneae: Araneidae) and its phylogenetic implications
Keywords: rRNA، RNA ریبوزومی; PCGs, protein-coding genes; COI–III, cytochrome c oxidase subunits I–III; ND1–6 and 4 L, NADH dehydrogenase subunits 1–6 and 4 L; ATP6 and ATP8, ATPase subunits 6 and 8; Cytb, cytochrome b; tRNA, transfer RNA; rRNA, ribosomal RNA; 16S rRNA and 12S rRNA, l
Phylogenetic analyses and evolutionary timescale of Coleoptera based on mitochondrial sequence
Keywords: rRNA، RNA ریبوزومی; Coleoptera; Polyphaga; Mitogenome; Phylogeny; Divergence timeMitogenome, mitochondrial genome; BI, Bayesian inference; ML, maximum likelihood; PCGs, protein coding genes; tRNA, transfer RNA; rRNA, ribosomal RNA; cox1–3, cytochrome c oxidase subunits I–III
Mitochondrial genome characterization of Tecia solanivora (Lepidoptera: Gelechiidae) and its phylogenetic relationship with other lepidopteran insects
Keywords: rRNA، RNA ریبوزومی; A, adenosine; G, guanosine; C, cytidine; T, thymidine; Nt, nucleotide; rRNA, ribosomal RNA; tRNA, transfer RNA; mtDNA, mitochondrial DNAMitogenome; T. solanivora; Lepidoptera; Genes; Phylogeny
Characterization of the transcriptome of Achromobacter sp. HZ01 with the outstanding hydrocarbon-degrading ability
Keywords: rRNA، RNA ریبوزومی; nr, Non-redundant; GO, Gene Ontology; COG, Clusters of Orthologous Groups; KEGG, Kyoto Encyclopedia of Genes and Genomes; rpm, Revolutions per minute; rRNA, Ribosomal RNA; cDNA, DNA complementary to RNA; ORFs, Open reading frames; NCBI, National Center fo
The first complete mitochondrial genome of a Belostomatidae species, Lethocerus indicus, the giant water bug: An important edible insect
Keywords: rRNA، RNA ریبوزومی; A, adenine; C, cytosine; DNA, deoxyribonucleicacid; EDTA, ethylenediaminetetraacetic acid; G, guanine; HCl, hydrochloric acid; M, molar; mM, millimolar; ML, maximum-likelihood; PCG, protein coding genes; RNA, ribonucleicacid; rRNA, ribosomal RNA; tRNA, tr
Protein–RNA Dynamics in the Central Junction Control 30S Ribosome Assembly
Keywords: rRNA، RNA ریبوزومی; rRNA, ribosomal RNA; smFRET, single-molecule Förster or fluorescence resonance energy transfer; PCR, polymerase chain reaction; WT, wild type; WC, Watson–Crick; GFP, green fluorescent protein; rprotein, ribosomal protein16S rRNA; ribosome protein S15; RNA
The use of transcriptomic next-generation sequencing data to assemble mitochondrial genomes of Ancistrus spp. (Loricariidae)
Keywords: rRNA، RNA ریبوزومی; mtDNA, mitochondrial DNA; rRNA, ribosomal RNA; tRNA, transfer RNA; mRNA, messenger RNA; PCR, Polymerase Chain Reaction; ESTs, expressed sequence tags; NGS, Next-generation Sequencing; CDS, coding sequenceMitogenome; Mitochondrial transcripts; Transcriptom
Non-canonical ribosomal DNA segments in the human genome, and nucleoli functioning
Keywords: rRNA، RNA ریبوزومی; rDNA, ribosomal DNA; rRNA, ribosomal RNA; (NORs), nucleoli organizers; (Xi), inactive X chromosome; NADs, nucleoli associated domains; rIGSlncRNAs, ribosomal intergenic spacer long non-coding RNAs; NoDS, nucleolar detention signalHuman genome; rDNA scatte
Characterization of the Macropodus opercularis complete mitochondrial genome and family Channidae taxonomy using Illumina-based de novo transcriptome sequencing
Keywords: rRNA، RNA ریبوزومی; NGS, next-generation sequencing; bp, base pair; PCR, polymerase chain reaction; tRNA, transfer RNA; rRNA, ribosomal RNA; CR, control region; ATP6 and ATP8, ATPase subunits 6 and 8; ND1–ND6 and ND4L, NADH dehydrogenase subunits 1–6 and 4 L; COX1–COX3, cyto
Interaction between Bacillus subtilis YsxC and ribosomes (or rRNAs)
Keywords: rRNA، RNA ریبوزومی; P-loop, phosphate-binding loop; GMPPNP, guanylyl-imidodiphosphate; rRNA, ribosomal RNA; Tm, melting temperature; TSA, thermal shift assay; DTT, dithiothreitolYsxC; GTPase; Ribosome binding; Bacillus subtilis
Regulation of the association of the PAF53/PAF49 heterodimer with RNA polymerase I
Keywords: rRNA، RNA ریبوزومی; pol I, RNA polymerase I; rRNA, ribosomal RNA; A127, β subunit of RNA polymerase I; PBS, phosphate-buffered saline; BSA, bovine serum albumin; PAF49, polymerase associated factor 49 kDa; PAF53, polymerase associated factor 53 kDa; a43 or rpa43, mouse homol
DNA damage stress induces the expression of Ribosomal Protein S27a gene in a p53-dependent manner
Keywords: rRNA، RNA ریبوزومی; ARF, alternative reading frame; ARPP P0, acidic ribosomal phosphoprotein P0; ChIP, chromatin immunoprecipitation; DDR, DNA damage response; IHH, immortalized human hepatocyte; rDNA, ribosomal DNA; rRNA, ribosomal RNA; RPs, ribosomal proteins; RPS27a, ribo
Functional divergence of eukaryotic RNA polymerases: Unique properties of RNA polymerase I suit its cellular role
Keywords: rRNA، RNA ریبوزومی; Pol, RNA polymerase; rDNA, ribosomal DNA; rRNA, ribosomal RNA; CF, core factor; UAF, upstream activating factorRNA polymerase; Transcription; Ribosome
RNA modification enzymes encoded by the gid operon: Implications in biology and virulence of bacteria
Keywords: rRNA، RNA ریبوزومی; GidA; GidB; Pathogenesis; Stress response; Antibiotic resistanceRNA, ribonucleic acid; mRNA, messenger RNA; tRNA, transfer RNA; rRNA, ribosomal RNA; gid, glucose-inhibited division; mnm5s2U, 5-methylaminomethyl-2-thiouridine; RsmG, ribosomal small unit me
When Too Much ATP Is Bad for Protein Synthesis
Keywords: rRNA، RNA ریبوزومی; NTP, nucleotide triphosphate; (p)ppGpp, guanosine penta/tetraphosphate; rRNA, ribosomal RNA; LPS, lipopolysaccharide; ORF, open reading framemagnesium; PhoP/PhoQ; protein synthesis; ribosome; stress response
Emerging Roles for Maf1 beyond the Regulation of RNA Polymerase III Activity
Keywords: rRNA، RNA ریبوزومی; rRNA, ribosomal RNA; NLS, nuclear localization sequences; PTM, posttranslational modification; PKA, protein kinase A; CK2, casein kinase 2; TBP, TATA binding proteinRNA polymerase III; Caenorhabditis elegans; Drosophila melanogaster; mouse; human
Detection and discrimination of biofilm populations using locked nucleic acid/2′-O-methyl-RNA fluorescence in situ hybridization (LNA/2′OMe-FISH)
Keywords: rRNA، RNA ریبوزومی; EPS, extracellular polymeric substances; FISH, fluorescence in situ hybridization; rRNA, ribosomal RNA; CLSM, confocal laser scanning microscopy; PNA, peptide nucleic acid; LNA, locked nucleic acid; 2′OMe, 2′-O-methyl-RNA; CAUTIs, catheter-associated urin
The mitochondrial genome of the Saunders's gull Chroicocephalus saundersi (Charadriiformes: Laridae) and a higher phylogeny of shorebirds (Charadriiformes)
Keywords: rRNA، RNA ریبوزومی; dNTP, deoxyribonucleoside triphosphate; aa, amino acid(s); rRNA, ribosomal RNA; tRNA, transfer RNA; PCGs, Protein coding genes; ND1, NADH dehydrogenase subunit 1; ND2, NADH dehydrogenase subunit 2; COI, cytochrome c oxidase subunit I; COII, cytochrome c o
The complete mitochondrial DNA of Tegillarca granosa and comparative mitogenomic analyses of three Arcidae species
Keywords: rRNA، RNA ریبوزومی; atp6, ATPase subunit 6 genes; Cytb, cytochrome b gene; cox1–3, cytochrome c oxidase subunits I–III genes; NCR, non-coding region; nad1–6 and nad4L, NADH dehydrogenase subunits 1–6 and 4L genes; ML, maximum likelihood; rRNA, ribosomal RNA; rrnL and rrnS, l
High-resolution microscopy of active ribosomal genes and key members of the rRNA processing machinery inside nucleolus-like bodies of fully-grown mouse oocytes
Keywords: rRNA، RNA ریبوزومی; GV, germinal vesicle; NLB, nucleolus-like body; NSN, non-surrounded nucleolus; SN, surrounded nucleolus; rDNA, ribosomal DNA; rRNA, ribosomal RNA; pre-rRNA, the 47S precursor rRNA; 5’ETS, 5’-external transcribed spacer; ITS1, internal transcribed spacer 1
Two nearly complete mitogenomes of wheat stem borers, Cephus pygmeus (L.) and Cephus sareptanus Dovnar-Zapolskij (Hymenoptera: Cephidae): An unusual elongation of rrnS gene
Keywords: rRNA، RNA ریبوزومی; C. pygmeus, Cephus pygmeus; C. sareptanus, Cephus sareptanus; C. cinctus, Cephus cinctus; Mitogenome, mitochondrial genome; bp, base pair; PCGs, protein coding genes; rRNA, ribosomal RNA; tRNA, transfer RNA; A + T-rich region, adenine + thymine-rich regio
Nucleolar dysfunction in Huntington's disease
Keywords: rRNA، RNA ریبوزومی; HD, Huntington's disease; htt, huntingtin; mthtt, mutant htt; MSNs, medium spiny neurons; rDNA, ribosomal DNA; rRNA, ribosomal RNA; UBF, upstream binding factor; HAT, histone acetyltransferase; Pol I, RNA polymerase I; HMT, histone methyltransferase; CBP,
The nucleotide composition of the spacer sequence influences the expression yield of heterologously expressed genes in Bacillus subtilis
Keywords: rRNA، RNA ریبوزومی; Heterologous expression; Translation initiation; Spacer sequence; Folding of transcript; Bacillus subtilisGOI, gene of interest; P, probability (in significance testing); R, correlation coefficient; rRNA, ribosomal RNA; SD, Shine–Dalgarno; nt, nucleotide(
Simultaneous separation of five major ribonucleic acids by capillary electrophoresis with laser-induced fluorescence in the presence of electroosmotic flow: Application to the rapid screening of 5S rRNA from ovarian cancer cells
Keywords: rRNA، RNA ریبوزومی; EtBr, ethidium bromide; mRNA, messenger RNA; miRNA, micro RNA; PEO, poly(ethylene oxide); rRNA, ribosomal RNA; tRNA, transfer RNAEthidium bromide; Capillary electrophoresis; Laser-induced fluorescence; Poly(ethylene oxide); On-column concentration; Ovaria
Assembly and annotation of full mitochondrial genomes for the corn rootworm species, Diabrotica virgifera virgifera and Diabroticabarberi (Insecta: Coleoptera: Chrysomelidae), using Next Generation Sequence data
Keywords: rRNA، RNA ریبوزومی; tRNA, Transfer RNA; rRNA, Ribosomal RNA; PCG, Protein coding gene; MtD, Mitochondrial/mitochondrion; WCR, Western corn rootworm; NCR, Northern corn rootworm; ED, Extended diapause trait; ND, Non-diapause trait; NGS, Next Generation Sequencing; SRA, Short
Evolution of the tRNA gene family in mitochondrial genomes of five Meretrix clams (Bivalvia, Veneridae)
Keywords: rRNA، RNA ریبوزومی; atp6 and atp8, ATPase subunit 6 and 8 genes; cob, cytochrome b gene; cox1–3, cytochrome c oxidase subunit I–III genes; nad1–6 and 4L, NADH dehydrogenase subunit 1–6 and 4L genes; rRNA, ribosomal RNA; rrnL and rrnS, large and small subunits of ribosomal RN
Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)
Keywords: rRNA، RNA ریبوزومی; bp, base pair(s); CR, control region; CSB, conserved sequence block; IGS, intergenic spacer; ML, maximum-likelihood; NGS, next generation sequencing; PCG, protein-coding genes; rRNA, ribosomal RNA; RSCU, relative synonymous codon usage; tRNA, transfer RNA
Complete chloroplast genome sequences of Praxelis (Eupatorium catarium Veldkamp), an important invasive species
Keywords: rRNA، RNA ریبوزومی; cp, chloroplast genome; SSC, small single-copy; LSC, large single-copy; IRs, inverted repeats; bp, base pair(s); rRNA, ribosomal RNA; tRNA, transfer RNA; EDTA, Ethylene Diamine Tetraacetic Acid; BSA, bovine serum albumin; Tris–HCl, tris(hydroxymethyl)amin
Molecular characterization and expression analysis of PPP1R3C in hypoxia-tolerant Indian catfish, Clarias batrachus (Linnaeus, 1758) under hypoxia
Keywords: rRNA، RNA ریبوزومی; rRNA, ribosomal RNA; UTR, untranslated region; ORF, open reading frame; qRT-PCR, quantitative real-time PCR; HIF, hypoxia inducible factor; PTG, protein targeting to glycogen; CBD21, carbohydrate binding domain type 21; MEGA4, Molecular Evolutionary Genet
The impact of transcription on posttranscriptional processes in yeast
Keywords: rRNA، RNA ریبوزومی; mRNA, messenger RNA; tRNA, transfer RNA; rRNA, ribosomal RNA; Pol, RNA polymeraseTranscription; RNA processing; RNA decay; Maf1; rRNA; tRNA
Emergence and expansion of TFIIB-like factors in the plant kingdom
Keywords: rRNA، RNA ریبوزومی; Pol, RNA polymerase; rRNA, ribosomal RNA; snRNA, small nuclear RNA; tRNA, transfer RNA; GTF, general transcription factor; TBP, TATA-binding protein; Brf1, TFIIB-related factor 1; siRNA, small interfering RNA; BRP, plant specific TFIIB-related protein; TF
Species-genomic relationships among the tribasic diploid and polyploid Carthamus taxa based on physical mapping of active and inactive 18S–5.8S–26S and 5S ribosomal RNA gene families, and the two tandemly repeated DNA sequences
Keywords: rRNA، RNA ریبوزومی; FISH, fluorescence in situ hybridisation; rDNA, ribosomal DNA; rRNA, ribosomal RNA; FITC, fluorescein isothiocyanate; NOR, nucleolar organising region; BSA, bovine serum albumin; SSC, 0.15 M NaCl/0.015 M Na3⋅ citrate pH 7.6Safflower; 5S rRNA genes; 18S–26
TFIIB-related factors in RNA polymerase I transcription
Keywords: rRNA، RNA ریبوزومی; Pol, RNA polymerase; GTF, general transcription factor; rRNA, ribosomal RNA; rDNA, ribosomal DNA; CE, core element; TSS, transcription start site; UAS, upstream activating sequence; UCE, upstream control element; UAF, upstream activating factor; UBF, upst
Nuclear factors: Roles related to mitochondrial deafness
Keywords: rRNA، RNA ریبوزومی; HL, hearing loss; mtDNA, mitochondrial DNA; rRNA, ribosomal RNA; AMP, adenosine monophosphate; ROS, reactive oxygen species; tRNA, transfer RNA; COX, cytochrome c oxidase; cDNA, DNA complementary to RNA; IM, inner membrane; OM, outer membrane; GTP, Guanos
Crystal ball: Fluorescence in situ hybridization in the age of super-resolution microscopy
Keywords: rRNA، RNA ریبوزومی; FISH, fluorescence in situ hybridization; rRNA, ribosomal RNA; SIM, Structured Illumination Fluorescence Microscopy; dSTORM, Stochastical Optical Reconstruction Microscopy; PALM, Photoactivated Localization MicrocopyFluorescence in situ hybridization; Sup
A loop-mediated isothermal amplification method for rapid detection of the multidrug-resistance gene cfr
Keywords: rRNA، RNA ریبوزومی; LAMP, loop-mediated isothermal amplification; cfr, chloramphenicol-florfenicol resistance; rRNA, ribosomal RNA; MRSA, methicillin-resistant Staphylococcus aureus; PCR, polymerase chain reaction; °C, degree Celsius; min, minute; LB, Luria Bertani; h, hour;
Efficient transcription by RNA polymerase I using recombinant core factor
Keywords: rRNA، RNA ریبوزومی; Pol, RNA polymerase; rRNA, ribosomal RNA; rDNA, ribosomal DNA; CF, core factor; UAF, upstream activating factor; TBP, TATA-binding proteinRibosome; Transcription; rRNA; Gene expression; In vitro transcription
Mitogenome polymorphism in a single branch sample revealed by SOLiD deep sequencing of the Lophelia pertusa coral genome
Keywords: rRNA، RNA ریبوزومی; SOLiD, sequencing by oligo ligation and detection; Mb, Megabase; mtDNA, mitochondrial DNA; OG, gene ontology; rRNA, ribosomal RNA; ITS, internal transcribed spacer; rDNA, ribosomal DNA; NUMT, nuclear mitochondrial pseudogene; Mt-SNP, mitochondrial single
New features of Asian Crassostrea oyster mitochondrial genomes: A novel alloacceptor tRNA gene recruitment and two novel ORFs
Keywords: rRNA، RNA ریبوزومی; atp6 and atp8, ATPase subunit 6 and 8 genes; cob, cytochrome b gene; cox1–3, cytochrome c oxidase subunits I–III genes; nad1–6 and 4L, NADH dehydrogenase subunits 1–6 and 4L genes; rRNA, ribosomal RNA; rrnL and rrnS, large and small subunits of ribosomal
Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera
Keywords: rRNA، RNA ریبوزومی; mtDNA, mitochondrial DNA; mt-genome, mitochondrial genome; tRNA, transfer RNA; rRNA, ribosomal RNA; H-strand, heavy strand of mitochondrial genome; L-strand, light strand of mitochondrial genome; OriL, origin of replication of L-strand; bp, base pair; kb,
RNA polymerase I activity is regulated at multiple steps in the transcription cycle: Recent insights into factors that influence transcription elongation
Keywords: rRNA، RNA ریبوزومی; Pol, RNA polymerase; rRNA, ribosomal RNA; rDNA, ribosomal DNA; Spt4/5, Spt4 and Spt5; Paf1C, Paf1 complexRibosome; Transcription; Transcription elongation; Gene expression; RNA polymerase I