Keywords: درخت گونه; Coalescent; Incomplete lineage sorting; Gene tree; Species tree; Incongruence; RF distance; Mapping traits; Comparative methods;
مقالات ISI درخت گونه (ترجمه نشده)
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Keywords: درخت گونه; Tree of life; Rooting; Nonstationary model; Eukaryogenesis; Species tree; Symbiosis; Mitochondria;
Keywords: درخت گونه; Species tree; Phylogenetics; Incomplete lineage sorting; Substitution model; Reversible polymorphism-aware phylogenetic model;
Keywords: درخت گونه; Species tree; Next generation sequencing; Molecular markers; Phylogeography; Non-model species; Climatic Niche Modelling
Keywords: درخت گونه; Coalescence; Rosids phylogenomics; Nuclear genes; Gene tree; Species tree
Keywords: درخت گونه; Gene tree; Species tree; Coalescent model; Gene flow; Migration; Topology; Coalescent history;
Keywords: درخت گونه; ASTRAL; Accurate Species TRee ALgorithm; bp; basepairs; c-gene; coalescence gene; CI; consistency index; CUs; coalescent units; GTR; general time reversible; ILS; incomplete lineage sorting; ML; maximum likelihood; MP-EST; maximum pseudo-likelihood for es
Keywords: درخت گونه; Gene tree; Species tree; Multispecies coalescent; Anomalous gene tree; Coalescent history; Phylogeny
Keywords: درخت گونه; Species tree; Primate evolution; Speciation; Coalescence;
Keywords: درخت گونه; Albertine Rift; Biogeography; Forest refugia; Small mammals; Species delimitation; Species tree;
Keywords: درخت گونه; Bayesian phylogenetics; Statistical consistency; Gene tree; Species tree;
Keywords: درخت گونه; Cheirogaleus; Microcebus; Species tree; Divergence times; Bayesian species delimitation; New species;
Multi-locus reassessment of a striking discord between mtDNA gene trees and taxonomy across two congeneric species complexes
Keywords: درخت گونه; Gene tree; Species tree; Speciation; Motacilla; Mito-nuclear discord; Asymmetric hybridization;
Underground cryptic speciation within the Maghreb: Multilocus phylogeography sheds light on the diversification of the checkerboard worm lizard Trogonophis wiegmanni
Keywords: درخت گونه; Amphisbaenian; Maghreb; Cryptic diversity; Fossorial reptiles; Species tree;
Species limits in the Morelet's Alligator lizard (Anguidae: Gerrhonotinae)
Keywords: درخت گونه; Mesaspis; Mesaspis moreletii; Phylogeny; Species delimitation; Species tree;
Alternative methods of phylogenetic inference for the Patagonian lizard group Liolaemus elongatus-kriegi (Iguania: Liolaemini) based on mitochondrial and nuclear markers
Keywords: درخت گونه; Concatenated gene tree; Lizard; Patagonia; Species tree;
Impact of tree priors in species delimitation and phylogenetics of the genus Oligoryzomys (Rodentia: Cricetidae)
Keywords: درخت گونه; DNA barcoding; Sigmodontinae; Genealogical models; Yule; Coalescent; Species tree;
Complete species-level phylogeny of the leaf warbler (Aves: Phylloscopidae) radiation
Keywords: درخت گونه; Species tree; Concatenation; Taxonomic revision;
Species delimitation and biogeography of the gnatcatchers and gnatwrens (Aves: Polioptilidae)
Keywords: درخت گونه; Speciation; Species tree; Neotropical; Migration; Bird; Phylogeography;
A phylogenomic perspective on the robust capuchin monkey (Sapajus) radiation: First evidence for extensive population admixture across South America
Keywords: درخت گونه; Neotropical primates; Phylogeny; Single nucleotide polymorphisms (SNPs); Species tree; Ultraconserved elements (UCEs);
What happened in the South American Gran Chaco? Diversification of the endemic frog genus Lepidobatrachus Budgett, 1899 (Anura: Ceratophryidae)
Keywords: درخت گونه; Miocene marine introgression; Species tree; Fossil calibration; Lepidobatrachus asper; Lepidobatrachus laevis; Lepidobatrachus llanensis;
From America to Eurasia: a multigenomes history of the genus Abies
Keywords: درخت گونه; Abies; Multilocus phylogeny; Species tree; Molecular dating; Mitochondrial DNA capture; Introgressive hybridization; Intercontinental migrations; Bering Land Bridge;
Revisiting the phylogeny of Zoanthidea (Cnidaria: Anthozoa): Staggered alignment of hypervariable sequences improves species tree inference
Keywords: درخت گونه; Gene tree; Hypervariable sequences; Phylogeny-informed alignment; Species tree; Staggered alignment;
Revised classification of the righteye flounders (Teleostei: Pleuronectidae) based on multilocus phylogeny with complete taxon sampling
Keywords: درخت گونه; Flatfish systematics; Character reassessment; Synapomorphies; Species tree; MrBayes; BEAST2; StarBEAST; Stepping stone analysis; Bayes factors; Compositional heterogeneity;
Macrosystematics of eutherian mammals combining HTS data to expand taxon coverage
Keywords: درخت گونه; High-throughput sequencing; Coalescent-based methods; Eutheria; Species tree;
Inferring the shallow phylogeny of true salamanders (Salamandra) by multiple phylogenomic approaches
Keywords: درخت گونه; Amphibia; Caudata; Salamandridae; Phylogenomics; RNAseq; Transcriptomes; RADseq; Mitochondrial genomes; Concatenation; Species tree;
Integrative species delimitation of the widespread North American jumping mice (Zapodinae)
Keywords: درخت گونه; Bayes factors; Cryptic diversity; Napaeozapus; Species distribution model; Species tree; Zapus;
Multilocus coalescent species delimitation to evaluate traditionally defined morphotypes in Hydrangea sect. Asperae (Hydrangeaceae)
Keywords: درخت گونه; Hydrangea; H. sect. Asperae; Species delimitation; Coalescent; Species tree;
Hidden diversity within the lizard genus Liolaemus: Genetic vs morphological divergence in the L. rothi complex (Squamata:Liolaeminae)
Keywords: درخت گونه; Natural selection; Species tree; iBPP; Divergence times; Patagonia;
Multilocus phylogeny of alligator lizards (Elgaria, Anguidae): Testing mtDNA introgression as the source of discordant molecular phylogenetic hypotheses
Keywords: درخت گونه; North America; Alligator lizards; Baja California; Species tree; Discordance; Introgression;
Never judge an iguana by its spines: Systematics of the Yucatan spiny tailed iguana, Ctenosaura defensor (Cope, 1866)
Keywords: درخت گونه; Iguaninae; Ctenosaura; Cachryx; Species tree; Phylogeography;
Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)
Keywords: درخت گونه; Hybridization; Coalescence; Species tree; Target-enrichment; Cytonuclear discordance;
Present diversity of Galápagos leaf-toed geckos (Phyllodactylidae: Phyllodactylus) stems from three independent colonization events
Keywords: درخت گونه; Galápagos; Island biogeography; Lizards; Multiple colonizations; Phylogeny; Species tree
Multi-locus phylogenetic inference among New World Vultures (Aves: Cathartidae)
Keywords: درخت گونه; Cathartidae; Miocene; Vulture; Condor; Scavenger; Species tree;
The taxonomy of the Tarentola mauritanica species complex (Gekkota: Phyllodactylidae): Bayesian species delimitation supports six candidate species
Keywords: درخت گونه; Tarentola mauritanica; Species tree; Bayesian species delimitation;
Colorful patterns indicate common ancestry in diverged tiger beetle taxa: Molecular phylogeny, biogeography, and evolution of elytral coloration of the genus Cicindela subgenus Sophiodela and its allies
Keywords: درخت گونه; Character evolution; Divergence time; Habitat; Species tree; Taxonomy
Methodological congruence in phylogenomic analyses with morphological support for teiid lizards (Sauria: Teiidae)
Keywords: درخت گونه; Anchored phylogenomics; Concatenation; Species tree; Systematics; Tegu; Whiptail
Phylogeny and temporal diversification of the New World pond turtles (Emydidae)
Keywords: درخت گونه; Species tree; Chronogram; Divergence time; Fossil constraints; Emydinae; Deirochelyinae
Evaluating the phylogenetic signal limit from mitogenomes, slow evolving nuclear genes, and the concatenation approach. New insights into the Lacertini radiation using fast evolving nuclear genes and species trees
Keywords: درخت گونه; Lacertini radiation; Hard polytomy; Species tree; Concatenation; nuclear DNA; Multilocus phylogeny
Integrating multiple evidences in taxonomy: species diversity and phylogeny of mustached bats (Mormoopidae: Pteronotus)
Keywords: درخت گونه; Integrative taxonomy; Evolutionary history; Euclidean distances; Phylogeny; Species tree; Neotropical diversity
Resolving the higher-order phylogenetic relationships of the circumtropical Mabuya group (Squamata: Scincidae): An out-of-Asia diversification
Keywords: درخت گونه; Species tree; Toenayar gen. nov; Novemcarinata; Heremites; Mabuyidae; Mabuyinae;
Multilocus species tree analyses resolve the ancient radiation of the subtribe Zizaniinae (Poaceae)
Keywords: درخت گونه; Ancient rapid radiation; Incomplete lineage sorting; Multilocus data; Species tree; Zizaniinae;
Phylogenetic relationships of Goneaperca and the evolution of parental care in darters (Teleostei: Percidae)
Keywords: درخت گونه; Species tree; Phylogeny; Gene tree discordance; Etheostoma; Catonotus; Darters;
Multi-locus tree and species tree approaches toward resolving a complex clade of downy mildews (Straminipila, Oomycota), including pathogens of beet and spinach
Keywords: درخت گونه; Cospeciation; Host shift; Multi-locus phylogeny; Oomycetes; Peronospora farinosa; Species tree
A hairy case: The evolution of filtering carnivorous Drusinae (Limnephilidae, Trichoptera)
Keywords: درخت گونه; Phylogeny; âBEAST; Species tree; Larval key; Filter-feeding;
Multilocus sequence data reveal dozens of putative cryptic species in a radiation of endemic Californian mygalomorph spiders (Araneae, Mygalomorphae, Nemesiidae)
Keywords: درخت گونه; DNA barcoding; Cryptic species; Genealogical concordance; Species tree; Sympatry
Speciation history and widespread introgression in the European short-call tree frogs (Hyla arborea sensu lato, H. intermedia and H. sarda)
Keywords: درخت گونه; Cryptic species complex; Bayesian species delimitation; Gene flow; Species tree; Phylogeography; Systematics;
Is the extremely rare Iberian endemic plant species Castrilanthemum debeauxii (Compositae, Anthemideae) a 'living fossil'? Evidence from a multi-locus species tree reconstruction
Keywords: درخت گونه; Chronogram; Coalescent; Gene tree; Incomplete lineage sorting; Leucanthemopsidinae; Species tree;
Differential introgression and effective size of marker type influence phylogenetic inference of a recently divergent avian group (Phasianidae: Tympanuchus)
Keywords: درخت گونه; Effective population size; Mito-nuclear discordance; Hybridization; Species tree; Sexual selection; Z-chromosome;
Molecular phylogeny and diversification of a widespread Neotropical rainforest bird group: The Buff-throated Woodcreeper complex, Xiphorhynchus guttatus/susurrans (Aves: Dendrocolaptidae)
Keywords: درخت گونه; Biogeography; Neotropics; Phylogeography; Taxonomy; Species tree;