Keywords: SSRs, simple sequence repeats; MNRs, mononucleotide repeatsMononucleotide repeats; Virus genomes; Evolution
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De novo assembly and characterization of the transcriptome of the pancreatic fluke Eurytrema pancreaticum (trematoda: Dicrocoeliidae) using Illumina paired-end sequencing
Keywords: NGS, next-generation sequencing; CDS, coding sequences; SSRs, Simple sequence repeats; MISA, MIcroSAtellite; SNPs, single nucleotide polymorphisms; SRA, Sequence Read ArchiveEurytrema pancreaticum; Transcriptome; De novo; Next-generation sequencing
Characterization of perfect microsatellite based on genome-wide and chromosome level in Rhesus monkey (Macaca mulatta)
Keywords: SSRs, simple sequence repeats; MI, microsatellite instability; dMAX, maximum distanceRhesus monkey; Genome; Chromosome; Perfect microsatellite; Characterization
Survey and analysis of simple sequence repeats (SSRs) in three genomes of Candida species
Keywords: SSRs, simple sequence repeats; CM, the count of microsatellites; LM, the length of microsatellites; RA, relative abundance; RD, relative density; CCM, the count of compound microsatellites; LCM, the length of compound microsatellitesSimple sequence repeat
Comparative analysis of microsatellites and compound microsatellites in T4-like viruses
Keywords: SSRs, simple sequence repeats; CM, compound microsatellites; RA, relative abundance; RD, relative density; NM, the number of microsatellites; LM, the total length of all microsatellites; NCM, the number of compound microsatellites; LCM, the total length o
The analysis of microsatellites and compound microsatellites in 56 complete genomes of Herpesvirales
Keywords: SSRs, simple sequence repeats; cSSR, individual microsatellites being part of such a compound microsatellite; CM, the counts of microsatellites in each genome; CCM (also called CCMobs), the counts of compound microsatellites in each genome; CCMexp, the ex
Genome-wide analysis of simple sequence repeats in the model medicinal mushroom Ganoderma lucidum
Keywords: CDSs, coding sequences; CYPs, cytochrome P450 monooxygenases; GO, Gene Ontology; HMGR, 3-hydroxy-3-methylglutaryl-CoA reductase; MVA, mevalonic acid; SSRs, simple sequence repeats; TEs, transposable elements; UTRs, untranslated regionsSimple sequence repe
Functional classification of ESTs from vernonia (Vernonia galamensis L.) cDNA library
Keywords: ESTs, expressed sequence tags; SSRs, simple sequence repeats; cDNA, complementary DNA; FA gel electrophoresis, formaldehyde agars gel electrophoresis; RNA, ribonucleic acid; QTL, quantitative trait lociExpressed sequence tags; SSR; Microsatellite markers
Similar distribution of simple sequence repeats in diverse completed Human Immunodeficiency Virus Type 1 genomes
Keywords: SSrs, simple sequence repeats; HIV-1, Human Immunodeficiency Virus Type 1Simple sequence repeat; Microsatellite; Human Immunodeficiency Virus Type 1