Genetic diversity of Microcystis populations in a bloom and its relationship to the environmental factors in Qinhuai River, China

Cyanobacterial blooms, forming massive scum and various cyanotoxins, increasingly spread in a wide range of freshwater ecosystems. One heavy Microcystis bloom occurred in the entire Qinhuai River basin in 2010 summer for the first time. To determine the Microcystis populations and their spatial distributions along Qinhuai River, a molecular approach was applied by sequencing the DNA library based on the internal transcribed spacer sequences of 16-23S rRNA (ITS). The parsimony network (TCS) analysis showed that 9 groups were formed based on the main 24 genotypes, and each group was dominated by one highly represented root sequence. Marked changes in the composition and proportion of the Microcystis ITS genotype were detected from the upper to the lower reaches. The seed sources forming the bloom were probably located at 4 different locations. Furthermore, it was found that pH was the primary factor affecting the spatial distribution of the main genotype group among samples.