miRSeqNovel: An R based workflow for analyzing miRNA sequencing data

We present miRSeqNovel, an R based workflow for miRNA sequencing data analysis. miRSeqNovel can process both colorspace (SOLiD) and basespace (Illumina/Solexa) data by different mapping algorithms. It finds differentially expressed miRNAs and gives conservative prediction of novel miRNA candidates with customized parameters.miRSeqNovel is freely available at http://sourceforge.net/projects/mirseq/files.