Comparing two evolutionary mechanisms of modern tRNAs

All modern tRNA gene families have a high similarity in their primary structure, and share the same cloverleaf secondary structure and an inverted L tertiary structure, which provide the clues for the study of their origin and evolution. There are two important mechanisms of the tRNA sequences evolution. One is point mutation, another is complementary duplication method. Both of them are supported by some specific examples. To find out the superior one of the two mechanisms or find out the most suitable mechanism for modern tRNAs evolution, we constructed two types of networks, parallel and antiparallel networks, based on the two mechanisms respectively, and then compared the degree distribution and clustering coefficient of networks constructed by the tRNA sequences of the single anticodon group, single isoaccepting group, and the whole tRNAs group of the two types of networks. The result of the comparison seems consistent with the idea that modern tRNA sequences evolved primarily by the mechanism of complementary method, and point mutation is an important and indispensable auxiliary mechanism during the evolutionary event.