کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
4498455 1318983 2008 8 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
Data compression and genomes: A two-dimensional life domain map
موضوعات مرتبط
علوم زیستی و بیوفناوری علوم کشاورزی و بیولوژیک علوم کشاورزی و بیولوژیک (عمومی)
پیش نمایش صفحه اول مقاله
Data compression and genomes: A two-dimensional life domain map
چکیده انگلیسی

We define the complexity of DNA sequences as the information content per nucleotide, calculated by means of some Lempel–Ziv data compression algorithm. It is possible to use the statistics of the complexity values of the functional regions of different complete genomes to distinguish among genomes of different domains of life (Archaea, Bacteria and Eukarya). We shall focus on the distribution function of the complexity of non-coding regions. We show that the three domains may be plotted in separate regions within the two-dimensional space where the axes are the skewness coefficient and the curtosis coefficient of the aforementioned distribution. Preliminary results on 15 genomes are introduced.

ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Journal of Theoretical Biology - Volume 253, Issue 2, 21 July 2008, Pages 281–288
نویسندگان
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