کد مقاله | کد نشریه | سال انتشار | مقاله انگلیسی | نسخه تمام متن |
---|---|---|---|---|
5589885 | 1569837 | 2017 | 7 صفحه PDF | دانلود رایگان |
عنوان انگلیسی مقاله ISI
A genome-wide analysis of simple sequence repeats in Apis cerana and its development as polymorphism markers
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کلمات کلیدی
observed number of allelesTTRSSSRsPICPNRsA. melliferaApis mellifera - آپیس ملیفراApis cerana - apis ceranaTrinucleotide repeats - ترنوکوئوتید تکرار می شودeffective number of alleles - تعداد موثر آللSimple sequence repeats - دنباله ساده تکرار می شودsimple sequence repeat - دنباله ساده تکرار کنیدDinucleotide repeats - دینوکلئوتید تکرار می شودHoneybee - زنبور عسلpolymorphism information content - محتوای اطلاعات پلی مورفیسمUTR یا untranslated regions - منطقه ترجمه نشدهuntranslated region - منطقه غیر ترجمهGene ontology - هستیشناسی ژنیPolymorphism - پلی مورفیسمGenome - ژنوم
موضوعات مرتبط
علوم زیستی و بیوفناوری
بیوشیمی، ژنتیک و زیست شناسی مولکولی
ژنتیک
پیش نمایش صفحه اول مقاله
![عکس صفحه اول مقاله: A genome-wide analysis of simple sequence repeats in Apis cerana and its development as polymorphism markers A genome-wide analysis of simple sequence repeats in Apis cerana and its development as polymorphism markers](/preview/png/5589885.png)
چکیده انگلیسی
The Asian honeybee (Apis cerana) is an important indigenous species that play an indispensable role in the ecological balance and biological diversity. Few studies have been conducted to characterize the simple sequence repeats (SSRs) derived from A. cerana, so, in this study, a genome-wide screening for SSRs were firstly performed in the genome of A. cerana by comparison with that in west honeybee (Apis mellifera). There were 20,9991 SSRs distributed throughout the genome of A. cerana (Korea strain) and di-nucleotides were the most frequent SSR type. Both total number and density of SSRs in A. cerana genome were smaller than that in A. mellifera genome. Through comparing length discrepancy of SSRs loci among several isolates based on sequence alignment, 218 potential polymorphic SSRs primers derived from A. cerana were presented. Five among these SSR markers were evaluated for amplification in twenty-eight colonies of Apis cerana cerana (Chinese honeybee), which showed highly polymorphic, with the value of Polymorphism information content (PIC) ranging from 0.47 to 0.61. All these results will contribute to further develop more effective SSRs markers derived from A. cerana, which can be used to study genetic structure and population polymorphism of Asian honeybee.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Gene - Volume 599, 30 January 2017, Pages 53-59
Journal: Gene - Volume 599, 30 January 2017, Pages 53-59
نویسندگان
Lu Liu, Mingzhu Qin, Lin Yang, Zhenzhen Song, Li Luo, Hongyin Bao, Zhenggang Ma, Zeyang Zhou, Jinshan Xu,