کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
6877740 692958 2014 7 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
MDWiZ: A platform for the automated translation of molecular dynamics simulations
موضوعات مرتبط
مهندسی و علوم پایه شیمی شیمی تئوریک و عملی
پیش نمایش صفحه اول مقاله
MDWiZ: A platform for the automated translation of molecular dynamics simulations
چکیده انگلیسی

- The MDWiZ platform for the one-click, automated translation of molecular dynamics simulation is presented.
- MDWiZ version 1.0 allows conversions from GROMACS to LAMMPS independently of the force field used and simulation set up with a 10−9 kJ mol−1 internal numerical accuracy for energies.
- A rigorous validation on a set of molecular systems with complementary chemical topologies is presented.
- MDWiZ version 1.0 is freely accessible as a web portal.
- The MDWiZ platform is being extended to other software engines and force fields to automate format conversion and aid the accurate comparison of alternative simulation protocols.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Journal of Molecular Graphics and Modelling - Volume 48, March 2014, Pages 80-86
نویسندگان
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