Keywords: Children's paddling pool; Microbiota; Contamination; Metagenome; Small subunit rRNA gene
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Keywords: Fish; Epinephelus fuscoguttatus; Jakarta; Microbiome; Metagenome; Functional annotation
PNGM-1, a novel subclass B3 metallo-β-lactamase from a deep-sea sediment metagenome
Keywords: Deep-sea Edison Seamount; Metagenome; Antimicrobial resistance; B3 metallo-β-lactamase;
The metagenome of bromeliads phytotelma in Puerto Rico
Keywords: Bromeliads; Phytotelma; DNA; Metagenome; Characterization; Illumina;
Data on partial polyhydroxyalkanoate synthase genes (phaC) mined from Aaptos aaptos marine sponge-associated bacteria metagenome
Keywords: Marine sponge; Metagenome; Polyhydroxyalkanoate synthase gene; Phylogenetic analysis;
Practical evaluation of 11 de novo assemblers in metagenome assembly
Keywords: Metagenome; Assembly; N50; Misassemblies;
Contrasting microbial community composition and function perspective of the biofilms in shrimps (Macrobrachium nipponense) cultured systems
Keywords: Macrobrachium nipponense; Microbial community; Biolog-Eco; Metagenome;
Gene-centric metegenome analysis reveals diversity of Pseudomonas aeruginosa biofilm gene orthologs in fresh water ecosystem
Keywords: Biofilm; Freshwater; Metagenome; Ortholog PCR; Pseudomonas aeruginosa;
DNA sequencing and metagenomics of cultivated and uncultivated chernozems in Russia
Keywords: Chernozems; Virgin soil; Cropland; Kursk chernozem; Microbiomes; Metagenome; Deep sequencing; Microorganisms; Fungi;
Acute exposure to PBDEs at an environmentally realistic concentration causes abrupt changes in the gut microbiota and host health of zebrafish
Keywords: Gut microbiota; PBDEs; Zebrafish; Intestinal health; Metagenome; AhR; Aryl hydrocarbon receptors; CAT; Catalase; DMSO; Dimethyl sulfoxide; ELISA; Enzyme-linked immunosorbent assay; ER; Estrogen receptors; EROD; Ethoxyresorufin-O-deethylase; FA; Fatty acid
Metagenomic and 13C tracing evidence for autotrophic atmospheric carbon absorption in a semiarid desert
Keywords: Autotrophic microbes; Carbon dioxide; Metagenome; 13CO2 labelling; Carbon fixation pathways;
Biochar does not attenuate triclosan's impact on soil bacterial communities
Keywords: Biodegradation; Xenobiotic; Biosolid; Pollutant; Metagenome;
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
Keywords: DL-starters; starters that contain strains of Lactococcus lactis subsp. lactis biovar. diacetylactis and Leuconostoc mesenteroides/pseudomesenteroides as aroma-producing bacteria; mC; mitomycin C; mC-induced; mitomycin C-induced; OD; optical density; TEM;
Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation
Keywords: Drill cuttings; Microbial consortium; Metagenome; Biodegradation; Biosurfactants;
Microbiota composition, gene pool and its expression in Gir cattle (Bos indicus) rumen under different forage diets using metagenomic and metatranscriptomic approaches
Keywords: Gir cattle; Fibre degrading enzymes; Metagenome; Metatranscriptome; Microbiome; Rumen;
Metagenome-based diversity analyses suggest a strong locality signal for bacterial communities associated with oyster aquaculture farms in Ofunato Bay
Keywords: KEGG; Kyoto Encyclopedia of Genes and Genomes; MG-RAST; Meta Genome Rapid Annotation Subsystem Technology; ROC-AUC; Receiver Operating Characteristic-Area Under the Curve; WGS; whole-genome sequence; KO; KEGG Orthology; Metagenome; Ofunato Bay;
Enzymatic characterization of a soluble aggregate induced by N-terminal extension to a lipolytic enzyme
Keywords: Soluble aggregate; Active aggregate; Peptide-Induced aggregation; Thermal dissociation; Dissociative activation; Metagenome;
Prediction of functional metagenomic composition using archived 16S rDNA sequence data from the gut microbiota of livestock
Keywords: Microbiota; Metagenome; 16S rRNA gene; Livestock; Feed efficiency; Bioinformatics;
Isolation and characterization of a halotolerant and protease-resistant α-galactosidase from the gut metagenome of Hermetia illucens
Keywords: Alpha-galactosidase; Metagenome; Halotolerant; Hermetia illucens; Gut;
Molecular diagnostics for verifying an etiological agent of emaciation disease in cultured olive flounder Paralichthys olivaceus in Korea
Keywords: Enteromyxum leei; Parvicapsula anisocaudata; Relative condition factor; Metagenome; Multiplex PCR;
A metagenomic survey identifies Tamdy orthonairovirus as well as divergent phlebo-, rhabdo-, chu- and flavi-like viruses in Anatolia, Turkey
Keywords: BTV1; Bole tick virus 1; BTV2; Bole tick virus 2; BTV3; Bole tick virus 3; CCHFV; Crimean-Congo hemorrhagic fever virus; CTV1; Changping tick virus 1; CTV2; Changping tick virus 2; L; large (genomic segment); M; medium (genomic segment); NGS; next generat
Response of microbial community structure to seasonal fluctuation on soils of Rann of Kachchh, Gujarat, India: Representing microbial dynamics and functional potential
Keywords: Rann of Kachchh; Microbial diversity; Saline desert; Stress response; Metagenome; Proteobacteria;
Characterization of microbial community structure and metabolic potential using Illumina MiSeq platform during the black garlic processing
Keywords: Black garlic; High-throughput sequencing; Metagenome; Microbial diversity; Metabolic potential;
A novel β-glucosidase isolated from the microbial metagenome of Lake Poraquê (Amazon, Brazil)
Keywords: Amazon; Metagenome; Cellulose; β-Glucosidase; GH1-family;
Cataloguing the bacterial community of the Great Salt Plains, Oklahoma using 16S rRNA based metagenomics pyrosequencing
Keywords: Metagenome; Pyrosequencing; Great Salt Plain; Bacteria; Salt flat; Vegetation; GSP; GAS; GAB;
Unraveling the microbial and functional diversity of Coamo thermal spring in Puerto Rico using metagenomic library generation and shotgun sequencing
Keywords: Metagenome; Shotgun sequencing; Fosmid library; Thermal spring; Bioprospect; Coamo; Puerto Rico;
prepare_taxa_charts.py: A Python program to automate generation of publication ready taxonomic pie chart images from QIIME
Keywords: 16S rRNA amplicon/ITS analysis; Metagenome; QIIME; Python; Taxonomy; Pie chart;
Profiling 5-tolyltriazole biodegrading sludge communities using next-generation sequencing and denaturing gradient gel electrophoresis
Keywords: 5-Methyl-benzotriazole; Xenobiotic; Activated sludge; Micropollutants; Metatranscriptome; Metagenome;
Metagenome analysis of the root endophytic microbial community of Indian rice (O. sativa L.)
Keywords: Endophytic microbial community; Food crop; Metagenome; OTU; Rice;
Polycyclic aromatic hydrocarbons (PAHs) enrich their degrading genera and genes in human-impacted aquatic environments
Keywords: Polycyclic aromatic hydrocarbon (PAHs); Metagenome; PAH-degradation-related genes (PAHDGs); Plasmid;
16S rDNA-based bacterial diversity analysis of Arabian Sea sediments: A metagenomic approach
Keywords: Arabian Sea; Metagenome; 16S rRNA gene; Bacterial diversity;
Microbiote intestinal : qu'en attendre au plan physiologique et thérapeutique ?
Keywords: Microbiote; Métagénome; Biomarqueurs; Dysbiose; Maladies chroniques; Prébiotiques; Symbiotiques; Biothérapeutiques vivants;
Nucleotide 9-mers characterize the type II diabetic gut metagenome
Keywords: Type II diabetes; Metagenome; Biomarkers; G-C content; Oligomers; Short nucleotide sequences; Tetranucleotides;
Pyrosequencing analysis of the microbiota of kusaya gravy obtained from Izu Islands
Keywords: Kusaya; Fermented gravy; Pyrosequencing; Metagenome; Microbial community
Screening, identification, and characterization of α-xylosidase from a soil metagenome
Keywords: α-Xylosidase; Metagenome; GH31; Xyloglucan; Xylose;
The change of microbial community from chlorinated solvent-contaminated groundwater after biostimulation using the metagenome analysis
Keywords: Metagenome; Trichloroethene; Tetrachloroethane; Dechlorination; Microbial community;
Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes
Keywords: metagenome; subsurface biogeochemistry; reaction pathway; greenhouse gases
Draft genome of an Aerophobetes bacterium reveals a facultative lifestyle in deep-sea anaerobic sediments
Keywords: Deep-sea sediment; Aerophobetes; Metagenome; Sugar fermentation; Cold seep;
Elucidation of rice rhizosphere metagenome in relation to methane and nitrogen metabolism under elevated carbon dioxide and temperature using whole genome metagenomic approach
Keywords: Metagenome; Rice; Elevated CO2 and temperature; Methane metabolism; Nitrogen metabolism; Rhizosphere;
SkÅad mikrobiomu jelit we wczesnym okresie życia a ustÄpowanie alergii na biaÅka mleka
Keywords: alergia na biaÅka mleka krowiego; mikrobiom; mikroflora; Clostridia; Firmicutes; Bacteroidetes; metagenom; kwas tÅuszczowy; alergia pokarmowa; sekwencjonowanie 16s rRNA; Cow's milk allergy; Microbiome; Microbiota; Clostridia; Firmicutes; Bacteroidetes;
A novel method to assess the biodiversity of parasites using 18S rDNA Illumina sequencing; parasitome analysis method
Keywords: Next generation sequencer (NGS); Parasite diversity; Metagenome; 18S ribosomal RNA;
Metagenomes provide valuable comparative information on soil microeukaryotes
Keywords: Metagenome; Microeukaryote; Soil
Bacterial tag encoded FLX titanium amplicon pyrosequencing (bTEFAP) based assessment of prokaryotic diversity in metagenome of Lonar soda lake, India
Keywords: Prokaryotic diversity; Metagenome; Lonar soda lake; bTEFAP; Bacteria; Archaea
Woods: A fast and accurate functional annotator and classifier of genomic and metagenomic sequences
Keywords: Metagenome; Functional annotation; Machine learning; Random Forest
Biodiversity and degradation potential of oil-degrading bacteria isolated from deep-sea sediments of South Mid-Atlantic Ridge
Keywords: Mid-Atlantic Ridge; Crude oil biodegradation; Microbial consortium; Metagenome; Sediments;
Dynamics of extracellular DNA decomposition and bacterial community composition in soil
Keywords: Decomposition; Mineralogy; Metagenome; Necromass; Community composition
Genome sequence determination and metagenomic characterization of a Dehalococcoides mixed culture grown on cis-1,2-dichloroethene
Keywords: Dehalococcoides; Bioremediation; Metagenome; Chloroethene; Reductive dehalogenase
The first metagenome of activated sludge from full-scale anaerobic/anoxic/oxic (A2O) nitrogen and phosphorus removal reactor using Illumina sequencing
Keywords: Metagenome; Biodiversity; Anaerobic/anoxic/oxic (A2O); Activated sludge; Nitrogen metabolism; ANAMMOX
An unusual feruloyl esterase belonging to family VIII esterases and displaying a broad substrate range
Keywords: Metagenome; Alkaliphilic; Feruloyl Esterase; Family VIII carboxylesterase
Insights into the annotated genome sequence of Methanoculleus bourgensis MS2T, related to dominant methanogens in biogas-producing plants
Keywords: Archaea; Compatible solute; Metagenome; Nitrogen metabolism; Methanomicrobiales