Keywords: خانواده پروتئین; AGO; Argonaute; AMY3; alpha-amylase-like 3; APX; ascorbate peroxidase; ARF5/MP; Auxin response factor 5; BAM1; beta-amylase 1; CAT; catalase; CK; control check; COG; Clusters of Orthologous Groups of proteins; DEG; differential expression gene; ERF1; Ethy
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Keywords: خانواده پروتئین; Protein function prediction; Protein function annotation; Protein family; Protein classification; Moonlighting protein;
A Model for Manganese interaction with Deinococcus radiodurans proteome network involved in ROS response and defense
Keywords: خانواده پروتئین; GO; gene ontology; HMM; hidden markov model; IRRB; ionizing-radiation resistance bacterium; IRSB; ionizing-radiation sensitive bacterium; LBPs; ligand binding patterns; MBP; metal binding pattern; PDB; protein data bank; Pfam; protein family; PPI; protein
Digital gene expression analysis in the gills of Ruditapes philippinarum exposed to short- and long-term exposures of ammonia nitrogen
Keywords: خانواده پروتئین; DGE; Digital gene expression technology; UIA; un-ionized ammonia nitrogen; NMDA; N-Methyl-d-aspartic acid; DEG; differentially expressed genes; Nr; NCBI non-redundant protein sequences; Nt; NCBI non-redundant nucleotide sequences; Pfam; Protein family; KO
The pharmacological properties of Ophiocordyceps xuefengensis revealed by transcriptome analysis
Keywords: خانواده پروتئین; 2â²-C-3â²-dA; 2â²-carbonyl-3â²-deoxyadenosine; 3â²-AMP; adenosine-3â²-monophosphate; 5â²-ADP; adenosine-5â²-diphosphate; 5â²-P-3â²-dADP; 3â²-deoxyadenosine-5â²-diphosphate; COG; Clusters of Orthologous Group
Transcriptome analysis and identification of genes associated with flower development in Rhododendron pulchrum Sweet (Ericaceae)
Keywords: خانواده پروتئین; qRT-PCR; quantitative real-time PCR; FLC; Flowering Locus; FT; Flowering Locus T; DEGs; differentially expressed genes; CO; CONSTANS; SOC1; SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1; LFY; LEAFY; AP1; APETALA1; CAL; CAULOFLOWER; AG; AGAMOUS; PGRs; Plant g
Transcriptome sequencing of Paeonia suffruticosa 'Shima Nishiki' to identify differentially expressed genes mediating double-color formation
Keywords: خانواده پروتئین; Transcriptome; Anthocyanins; P. suffruticosa 'Shima Nishiki'; Double-color; Differentially expressed genes (DEGs); HPLC; High-performance liquid chromatography; CHS; Chalcone synthase gene; CHI; Chalcone isomerase gene; F3H; Flavanone 3-hydroxylase ge
Advancing our understanding of the oxygen minimum zone microbial communities by an integrated metatranscriptomics approach
Keywords: خانواده پروتئین; OMZs; Oxygen Minimum Zones; GO; Gene Ontology; COG; Clusters of Orthologous Group; PFAM; Protein family; KEGG; Kyoto Encyclopedia of Genes and Genomes; SRA; Sequence Read Archive; dbCAN; DataBase for automated carbohydrate-active enzyme annotation; NGS; N
Genome expression profile analysis of two types of new roots in apple rootstock via Solexa sequencing
Keywords: خانواده پروتئین; Apple GFDB database; Apple Gene Function and Gene Family Database; GDR; Genome Database for Rosaceae; Pfam; Protein family; AR; Absorbing roots; GR; Growing roots; GO; Gene Ontology; DGE; Digital gene expression; EST; Expressed sequence tag; Root; Differe
Genome-wide identification and expression analysis of transcription factors in Solanum lycopersicum
Keywords: خانواده پروتئین; TF; transcription factor; BLAST; the Basic Local Alignment Search Tool; PFAM; Protein Family; HMM; Hidden Markov Model; ITAG; International Tomato Genome Sequencing Project; TRR; transcriptional regulation region; ITAG; International Tomato Genome Sequenc
The family of berberine bridge enzyme-like enzymes: A treasure-trove of oxidative reactions
Keywords: خانواده پروتئین; FAD-Linked oxidases; Alkaloids; Antibiotics; Covalent FAD; Flavoproteins; 6HDNO; 6-hydroxy-d-nicotine oxidase; A40926; teicoplanin homolog; CpADHAPS; alkyldihydroxyacetonephosphate synthase from Cavia porcellus; DdADHAPS; alkyldihydroxyacetonephosphate sy
The VAO/PCMH flavoprotein family
Keywords: خانواده پروتئین; Enzyme mechanism; Flavoprotein; Oxidoreductase; Phylogeny; Protein family; 4PO; 4-phenol oxidizing; ADPS; alkyl-dihydroxyacetone phosphate synthase; AldO; alditol oxidase; ALO; d-arabinono-1,4-lactone oxidase; BBE; berberine bridge enzyme; ChoX; cholester
Data for the characterization of the HSP70 family during osmotic stress in banana, a non-model crop
Keywords: خانواده پروتئین; Non-model plant; Protein family; HSP70; Allelic variant; Paralog
A look behind the screens: Characterization of the HSP70 family during osmotic stress in a non-model crop
Keywords: خانواده پروتئین; Non-model plant; Stress; Protein family; Proteogenomics; HSP70
Genome-wide identification and analysis of the MADS-box gene family in apple
Keywords: خانواده پروتئین; BLAST; Basic Local Alignment Search Tool; DAA; Day After Anthesis; GWD; Genome-wide duplication; HMM; Hidden Markov model; MEGA; Molecular Evolutionary Genetics Analysis; NJ; Neighbour-joining; Pfam; Protein family; NCBI; National Center for Biotechnology
Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks
Keywords: خانواده پروتئین; Enzyme; Protein sequence analysis; Protein family; Function discovery; Web tool
Structure of allergens and structure based epitope predictions
Keywords: خانواده پروتئین; Allergen structure; Protein family; X-ray; NMR; IgE epitope; Structure based epitope prediction;
Identification of novel phospholipase A2 group IX members in metazoans
Keywords: خانواده پروتئین; GIX phospholipase A2; GXIV phospholipase A2; Conserved domain; Pfam09056; PLA2; phospholipase A2; sPLA2; secreted phospholipase A2; GIX PLA2; group IX phospholipase A2; GXII PLA2; group XII phospholipase A2; GXIV PLA2; group XIV phospholipase A2; cd; cons
Genome-wide analysis and identification of stress-responsive genes of the NAM-ATAF1,2-CUC2 transcription factor family in apple
Keywords: خانواده پروتئین; Genome-wide analysis; NAC transcription factor; Gene family; Stress-responsive genes; Malus domestica; BLAST; the Basic Local Alignment Search Tool; GWD; genome-wide duplication; HMM; Hidden Markov Model; NAC, NAM, ATAF and CUC; transcription factor; MEGA
An integrated study of grain development of wheat (cv. Hereward)
Keywords: خانواده پروتئین; Wheat; Protein; Metabolomics; Cell walls; AX; arabinoxylan; AXAH; arabinoxylan arabinofuranohydrolase; AXOS; arabinoxylan oligosaccharide; BAHD; a family of acyltransferases named after the four first characterised members; β-glucan; (1,3:1,4) β-d-gluca
Mammalian alcohol dehydrogenases – A comparative investigation at gene and protein levels
Keywords: خانواده پروتئین; ADH, alcohol dehydrogenase; MDR, medium chain dehydrogenases/reductasesAlcohol dehydrogenase; Gene cluster; Isoforms; Mammalian gene family; Protein family
In vitro characterization of Arabidopsis CP12 isoforms reveals common biochemical and molecular properties
Keywords: خانواده پروتئین; Calvin cycle; Disulfide bridge; Protein family; Redox; Supramolecular complex
A gene family-based method for interspecies comparisons of sequencing-based transcriptomes and its use in environmental adaptation analysis
Keywords: خانواده پروتئین; transcriptome comparison; EST; protein family; reference gene set
Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) - Relation to pharmacological activities
Keywords: خانواده پروتئین; Proteome; Snake venom; Protein family; Daboia russelli siamensis; 2-D electrophoresis;
A comparative computational analysis of protein sequences and literature mining classify ‘orphan’ neurotransmitter transporters
Keywords: خانواده پروتئین; Protein sequence; Hydropathy distribution; Protein family; Neurotransmitter transporter; Orphan neurotransmitter transporter
Modeling the Evolution of Protein Domain Architectures Using Maximum Parsimony
Keywords: خانواده پروتئین; protein domain architecture; multi-domain proteins; domain recombination; domain evolution; protein family
Using Evolutionary Information and Ancestral Sequences to Understand the Sequence–Function Relationship in GLP-1 Agonists
Keywords: خانواده پروتئین; GLP-1, glucagon-like peptide 1; hGLP-1, human GLP-1(7–37); GLP-1A, Xenopus laevis GLP-1A; DPP-IV, dipeptidyl peptidase IV; ARP, ancestral reconstructed peptide; EMP, evolutionary mapped peptidediabetes; protein family; sequence–function mapping; molecular
Lipocalins – a family portrait
Keywords: خانواده پروتئین; Kernel lipocalin; Lipocalin domain; Outlier lipocalin; Protein family; Small hydrophobic ligandAGP; α1-acid glycoprotein; ApoD; Apolipoprotein D; ApoM; Apolipoprotein M; Attil (AtTIL); cDNA (protein) of lipocalin induced by heat shock in Arabidopsis thali