Keywords: انعطاف پذیری پروتئین; Enzyme engineering; GHMP kinase; Molecular dynamics; Protein flexibility; α-d-galactose;
مقالات ISI انعطاف پذیری پروتئین (ترجمه نشده)
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Insight into the mechanism of galactokinase: Role of a critical glutamate residue and helix/coil transitions
Keywords: انعطاف پذیری پروتئین; Active site; Molecular dynamics; Protein flexibility; Biocatalysis; Galactosemia; GALK1;
Keywords: انعطاف پذیری پروتئین; BoNT, botulinum neurotoxin; BoNT/A LC, botulinum neurotoxin light chain (LCA); LED, light emitting diode; DTT, dithiothreitol; CD, circular dichroism; RCT, rotational correlation timeFluorescence anisotropy decay; Molten globule; Protein flexibility; Botu
Keywords: انعطاف پذیری پروتئین; Tryptophan containing proteins; Phosphorescence lifetime; Temperature factors; Protein flexibility
Keywords: انعطاف پذیری پروتئین; Structure-based drug discovery; Homology modeling; Ligand docking; Virtual screening; Protein flexibility; Active site water molecules; GPCR; G Protein-coupled receptor; HM; homology modeling; HTD; high-throughput docking; LSHM; Ligand-steered homology mo
Keywords: انعطاف پذیری پروتئین; Protein structure; Protein partition; Aqueous two-phase system; Protein flexibility;
Keywords: انعطاف پذیری پروتئین; Antifolate; DHFR; Protein flexibility; X-ray crystallography; Molecular dynamics;
Keywords: انعطاف پذیری پروتئین; Three phase partitioning; Protein purification; Protein refolding; Enzymes in low water media; Protein flexibility; Circular dichroism of proteins;
Intrinsic structural versatility of the highly conserved 412-423 epitope of the Hepatitis C Virus E2 protein
Keywords: انعطاف پذیری پروتئین; HCV; Hepatitis C Virus; E2; envelope glycoprotein 2; CD81; Cluster of Differentiation 81; ThT; Thioflavin T; PDB; Protein Data Bank; mAb; monoclonal Antibodies; Fab; antigen-binding fragment; MD; molecular dynamics; RMSD; root mean square deviation; RMSIP
Structural changes of homodimers in the PDB
Keywords: انعطاف پذیری پروتئین; Conformational change; Protein complex; Homomultimer; Protein flexibility; Protein interface;
Original ArticlePhysiological and comparative genomic analysis of Acidithiobacillus ferrivorans PQ33 provides psychrotolerant fitness evidence for oxidation at low temperature
Keywords: انعطاف پذیری پروتئین; Genomic island; Horizontal transfer; Rusticyanin; Protein flexibility; Acidithiobacillus ferrivorans;
Evaluating the stability of pharmacophore features using molecular dynamics simulations
Keywords: انعطاف پذیری پروتئین; Pharmacophore modeling; Structure-based pharmacophore modeling; Molecular dynamics; Protein flexibility;
Increasing importance of protein flexibility in designing biocatalytic processes
Keywords: انعطاف پذیری پروتئین; Protein flexibility; Enzyme promiscuity; Intrinsically disordered proteins; Enzyme enantioselectivity; Enzymes in organic solvents
Characterizing the conformational dynamics of metal-free PsaA using molecular dynamics simulations and electron paramagnetic resonance spectroscopy
Keywords: انعطاف پذیری پروتئین; Cluster A-I solute-binding protein (SBP); Streptococcus pneumoniae; PsaA; Molecular dynamics simulations; Electron paramagnetic resonance (EPR) spectroscopy; Protein flexibility; Spin-label mobility;
The intrinsic dynamics of Cse1p and Xpot elucidated by coarse-grained models
Keywords: انعطاف پذیری پروتئین; Elastic Network Model; Finite Element Analysis; Karyopherin; Nucleocytoplasmic transport; Protein flexibility
A topological similarity measure for proteins
Keywords: انعطاف پذیری پروتئین; Protein similarity; Similarity measure; Protein flexibility; Protein structure; Persistent intervals; Jaccard index
N-terminal region of human chemokine receptor CXCR3: Structural analysis of CXCR3(1–48) by experimental and computational studies
Keywords: انعطاف پذیری پروتئین; CXCR3; Protein flexibility; Polyelectrolyte; Molecular dynamics; Post-translational modification; Intrinsic disorder
Frataxin from Psychromonas ingrahamii as a model to study stability modulation within the CyaY protein family
Keywords: انعطاف پذیری پروتئین; Protein flexibility; Protein stability; Protein dynamics; Stability modulation; Crystallography; Molecular dynamics simulations;
Impact of protein binding cavity volume (PCV) and ligand volume (LV) in rigid and flexible docking of protein-ligand complexes
Keywords: انعطاف پذیری پروتئین; Protein binding cavity volume; Protein flexibility; Structure-based drug design; Docking and scoring;
Large-scale motions in the adenylate kinase solution ensemble: Coarse-grained simulations and comparison with solution X-ray scattering
Keywords: انعطاف پذیری پروتئین; Protein flexibility; Solution ensembles; Conformational selection; Enzyme dynamics; Computational mutation;
Structural and functional analysis of the flexible regions of the catalytic α-subunit of protein kinase CK2
Keywords: انعطاف پذیری پروتئین; CK2α; catalytic subunit of protein kinase CK2; CK2β; regulatory subunit of protein kinase CK2; Hinge/αD; region comprising the hinge and the following helix αD of CK2; Protein flexibility; Hinge region; Emodin; Quinalizarin; Kinase inhibitors;
A new approach for investigating protein flexibility based on Constraint Logic Programming. The first application in the case of the estrogen receptor
Keywords: انعطاف پذیری پروتئین; CLP; Protein flexibility; Estrogen receptor; Protein folding
Motion planning algorithms for molecular simulations: A survey
Keywords: انعطاف پذیری پروتئین; Motion planning; Sampling-based algorithms; Molecular simulations; Protein flexibility; Protein folding; Protein–ligand interactions
Does azurin bind to the transactivation domain of p53? A Trp phosphorescence study
Keywords: انعطاف پذیری پروتئین; p53-tumor suppressor protein; Protein flexibility; Tryptophan phosphorescence; Acrylamide quenching; MDM2;
Ligand-induced fit affects binding modes and provokes changes in crystal packing of aldose reductase
Keywords: انعطاف پذیری پروتئین; Protein flexibility; Aldose reductase; Protein-ligand interaction; Thermodynamic signature; Different crystal forms;
Potentially increasing the metabolic stability of drug candidates via computational site of metabolism prediction by CYP2C9: The utility of incorporating protein flexibility via an ensemble of structures
Keywords: انعطاف پذیری پروتئین; CYP2C9; Metabolism; Docking; Protein flexibility; Computational chemistry
Characterizing protein motions from structure
Keywords: انعطاف پذیری پروتئین; Protein flexibility; Essential dynamics; Geometric simulation; Subspace comparisons
Elastic incoherent neutron scattering as a probe of high pressure induced changes in protein flexibility
Keywords: انعطاف پذیری پروتئین; Neutron scattering; High pressure; Protein unfolding; Protein flexibility; Trypsin; Lysozyme; Beta-lactoglobulin;
The bridge-region of the Ku superfamily is an atypical zinc ribbon domain
Keywords: انعطاف پذیری پروتئین; NHEJ; Zinc finger; Zinc ribbon; Protein flexibility; Segment-swapping;
Docking to flexible nicotinic acetylcholine receptors: A validation study using the acetylcholine binding protein
Keywords: انعطاف پذیری پروتئین; Protein flexibility; Molecular docking; Ensemble generation; Nicotinic; Acetylcholine receptors; nAChR; Acetylcholine binding protein; AChBP
Assessing the native state conformational distribution of ubiquitin by peptide acidity
Keywords: انعطاف پذیری پروتئین; Protein ensemble; Hydrogen exchange; Continuum electrostatics; Protein flexibility; Conformational selection;
Variation of protein binding cavity volume and ligand volume in protein–ligand complexes
Keywords: انعطاف پذیری پروتئین; Protein binding cavity volume; Protein flexibility; Ligand volume; Docking; Virtual screening
RosettaLigand Docking with Full Ligand and Receptor Flexibility
Keywords: انعطاف پذیری پروتئین; JNK3, c-Jun N-terminal kinase 3; MCM, Monte Carlo minimizationsmall-molecule docking; protein flexibility; backbone flexibility; Rosetta
Prediction of the receptor conformation for iGluR2 agonist binding: QM/MM docking to an extensive conformational ensemble generated using normal mode analysis
Keywords: انعطاف پذیری پروتئین; Protein flexibility; Molecular docking; Normal mode analysis; Elastic network model; Ensemble generation; iGluR2 receptor; Domain closure
Rigidification of a Flexible Protease Inhibitor Variant upon Binding to Trypsin
Keywords: انعطاف پذیری پروتئین; BPTI, bovine pancreatic trypsin inhibitor; IAS, isoaspartate; ITC, isothermal titration calorimetry; NMR, nuclear magnetic resonancebovine pancreatic trypsin inhibitor; X-ray crystallography; isothermal titration calorimetry; protein flexibility; binding
Expect the Unexpected or Caveat for Drug Designers: Multiple Structure Determinations Using Aldose Reductase Crystals Treated under Varying Soaking and Co-crystallisation Conditions
Keywords: انعطاف پذیری پروتئین; ALR1, aldehyde reductase; ALR2, aldose reductase; rmsd, root-mean-square deviation; MD, molecular dynamicsstructure-based drug design; binding mode; aldose reductase; protein flexibility; molecular dynamics
Fish and mammalian metallothioneins: a comparative study
Keywords: انعطاف پذیری پروتئین; CAIC; Comparative Analysis by Independent Contrasts; NMR; Nuclear Magnetic Resonance; Contrast analysis; Phylogenetic dependence; Hydropathy; Protein flexibility; Protein structure; Temperature adaptation;
Ribosomal cold-adaptation: Characterization of the genes encoding the acidic ribosomal P0 and P2 proteins from the Antarctic ciliate Euplotes focardii
Keywords: انعطاف پذیری پروتئین; EfP0; Euplotes focardii P0; EfP2; E. focardii P2; ErP0; Euplotes raikovi P0; ErP2; E. raikovi P2; EmP0; Euplotes minuta P0; EmP2; E. minuta P2; EvP0; Euplotes vannus P0; EvaP2; E. vannus P2; TtP0; Tetrahymena thermophila P0; TtL3; T. thermophila P1; RATE-