Keywords: SSR، توالی ساده تکرار می شود; SSR, simple sequence repeat; NRUBME, non-repeat-unit-based misalignment-elongation; T7M, T7 Meselson; DTRs, direct terminal repeats; RA, relative abundance; RD, relative density; RCRs, recombinant regions; NRCRs, non-recombinant regions; nWC, non-Watson-C
مقالات ISI SSR، توالی ساده تکرار می شود (ترجمه نشده)
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Keywords: SSR، توالی ساده تکرار می شود; SSR, simple sequence repeat; TBE, tris borate ethylenediaminetetracetic acid; TEMED, tetramethylethylenediamineOryza sativa; Brassica juncea; Microsatellite; SSR; PAGE; Silver staining
Keywords: SSR، توالی ساده تکرار می شود; SSR, simple sequence repeat; TSS, transcriptional start siteSimple sequence repeats; Microsatellites; Genome; DNA
De novo sequencing of Eucommia ulmoides flower bud transcriptomes for identification of genes related to floral development
Keywords: SSR، توالی ساده تکرار می شود; NCBI, National Center for Biotechnology Information; SSR, simple sequence repeat; GO, Gene ontology; EST, expressed sequence tag; QC, quality controlEucommia ulmoides; Transcriptome; Illumina sequencing; Flower bud
Genetic diversity and breeding history of Winter Mushroom (Flammulina velutipes) in China uncovered by genomic SSR markers
Keywords: SSR، توالی ساده تکرار می شود; SSR, Simple Sequence Repeat; ISSR, inter simple sequence repeat; RFLP, restriction-fragment length polymorphism; AFLP, amplified fragment length polymorphism; SCAR, sequence characterized amplified regions; CTAB, cetyl-trimethyl ammonium bromide; MISA, MI
Unraveling the efficiency of RAPD and SSR markers in diversity analysis and population structure estimation in common bean
Keywords: SSR، توالی ساده تکرار می شود; MI, marker index; PIC, polymorphic information content; PCA, principle component analysis; QTL, quantitative trait loci; RAPD, random amplified polymorphic DNA; Rp, resolving power; SSR, simple sequence repeat; UPGMA, unweighted pair group method with ari
De novo sequencing transcriptome of endemic Gentiana straminea (Gentianaceae) to identify genes involved in the biosynthesis of active ingredients
Keywords: SSR، توالی ساده تکرار می شود; NGS, next-generation sequencing; COGs, clusters of orthologous groups of proteins; GO, gene ontology; SSR, simple sequence repeat; TFs, transcription factor families; MEP, 2-C-methyl-D-erythritol-4-phosphate; MVA, mevalonic acid; TIAs, terpenoid indole al
De novo sequencing analysis of the Rosa roxburghii fruit transcriptome reveals putative ascorbate biosynthetic genes and EST-SSR markers
Keywords: SSR، توالی ساده تکرار می شود; AsA, ascorbic acid; GO, Gene Ontology; COGs, clusters of orthologous groups; KEGG, Kyoto Encyclopedia of Genes and Genomes; SSR, simple sequence repeat; EST, expressed sequence tag; NCBI, National Center for Biotechnology Information; DAA, days after anth
Gene set by de novo assembly of Perilla species and expression profiling between P. frutescens (L.) var. frutescens and var. crispa
Keywords: SSR، توالی ساده تکرار می شود; DEG, differentially expressed gene; RAPD, random amplified polymorphic DNA; AFLP, amplified fragment length polymorphism; SSR, simple sequence repeat; NGS, next-generation sequencing; GO, gene ontology; RPKM, reads per kilo base of exon model per million
Assessment of genetic diversity and population structure of mung bean (Vigna radiata) germplasm using EST-based and genomic SSR markers
Keywords: SSR، توالی ساده تکرار می شود; SSR, simple sequence repeat; EST-SSRs (eSSRs), expressed sequence tag-simple sequence repeats; gSSRs, genomic SSRs; MAS, marker assisted selection; NGS, next generation sequencing; He, expected heterozygosity; Na, number of alleles; Ne, effective number o
Microsatellite instability detected in tumor-related genes in C57BL/6J mice with thymic lymphoma induced by N-methyl-N-nitrosourea
Keywords: SSR، توالی ساده تکرار می شود; MSI, microsatellite instability; MNU, N-methyl-N-nitrosourea; SSR, simple sequence repeat; ENU, N-ethyl-N-nitrosourea; PBS, phosphate buffer saline; DMSO, dimethyl sulfoxide; H&E, hematoxylin and eosin; STR, simple tandem repeatN-methyl-N-nitrosourea (MNU
Transcriptome analysis of Capsicum annuum varieties Mandarin and Blackcluster: Assembly, annotation and molecular marker discovery
Keywords: SSR، توالی ساده تکرار می شود; GS-FLX, Genome Sequencer FLX system; NGS, next generation sequencing; PCR, polymerase chain reaction; SNP, single nucleotide polymorphism; SSR, simple sequence repeat; QTL, quantitative trait Locus; RNA, ribo nucleic acid; mRNA, messenger ribo nucleic aci
Genetic diversity of 129 spring orchid (Cymbidium goeringii) cultivars and its relationship to horticultural types as assessed by EST-SSR markers
Keywords: SSR، توالی ساده تکرار می شود; AFLP, amplified fragment length polymorphism; EST-SSR, expressed sequence tag-simple sequence repeat; ISSR, inter-simple sequence repeat; PCoA, principal coordinate analysis; RAPD, random amplified polymorphic DNA; SSR, simple sequence repeat; UPGMA, unwe
Characterization of the global transcriptome for cotton (Gossypium hirsutum L.) anther and development of SSR marker
Keywords: SSR، توالی ساده تکرار می شود; BLAST, Basic Local Alignment Search Tool; KEGG, Kyoto Encyclopedia of Genes and Genomes database; COG, Clusters of Orthologous Groups; GO, gene ontology; PCR, Polymerase Chain Reaction; SSR, Simple Sequence Repeat; TF, transcription factor; EST, Expressed
Incidence, complexity and diversity of simple sequence repeats across potexvirus genomes
Keywords: SSR، توالی ساده تکرار می شود; SSR, simple sequence repeat; cSSR, compound simple sequence repeat; IMEx, Imperfect Microsatellite Extraction; RD, relative density; RA, relative abundance; RDRP, RNA dependent RNA polymerase; TGB, triple gene block; CP, coat proteinPotexvirus; Simple seq
Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform
Keywords: SSR، توالی ساده تکرار می شود; NGS, next-generation sequencing; bp, base pair; GO, gene ontology; COGs, clusters of orthologous groups; KEGG, Kyoto Encyclopedia of Genes and Genomes; SSR, simple sequence repeat; SL, spliced leader; PSP, Paralytic Shellfish Poisoning; EST, Expressed Seq
Genome-wide identification and analysis of the aldehyde dehydrogenase (ALDH) gene superfamily of Gossypium raimondii
Keywords: SSR، توالی ساده تکرار می شود; ALDH, aldehyde dehydrogenase; AGNC, ALDH Gene Nomenclature Committee; NJ, neighbor-joining; SSR, simple sequence repeat; FDR, false discovery rate; ORF, open reading frame; Chr, chromosomeGenome; Cotton (Gossypium raimondii); ALDH; Gene nomenclature; Plan
In- silico exploration of thirty alphavirus genomes for analysis of the simple sequence repeats
Keywords: SSR، توالی ساده تکرار می شود; SSR, Simple sequence repeat; cSSR, Compound simple sequence repeat; IMEx, Imperfect Microsatellite Extraction; RD, Relative density; RA, Relative abundanceImperfect Microsatellite Extraction (IMEx); Simple sequence repeats (SSR); Compound microsatellite;
Occurrence and analysis of imperfect microsatellites in diverse potyvirus genomes
Keywords: SSR، توالی ساده تکرار می شود; SSR, Simple sequence repeat; cSSR, Compound simple sequence repeat; IMEx, Imperfect Microsatellite Extraction; dMAX, Maximum distance allowed between two simple sequence repeat; RD, Relative density; RA, Relative abundance; HC-Pro, Helper component protei
Expression QTL mapping in grapevine—Revisiting the genetic determinism of grape skin colour
Keywords: SSR، توالی ساده تکرار می شود; BLUP, best linear unbiased predictor; LOD, logarithm of odds; QTL, quantitative trait locus; Real-time qRT-PCR, real-time quantitative reverse transcription polymerase chain reaction; SSR, simple sequence repeat; UFGT, UDP-glucose:flavonoid 3-O-glucosyltr
In-silico analysis of simple and imperfect microsatellites in diverse tobamovirus genomes
Keywords: SSR، توالی ساده تکرار می شود; SSR, Simple sequence repeat; cSSR, Compound simple sequence repeat; IMEx, Imperfect Microsatellite Extraction; RD, Relative density; RA, Relative abundance; CP, Coat protein; MP, Movement proteinTobamovirus; Simple sequence repeats; IMEx; dMAX; Correlatio
Genetic and chemo-divergence in eighteen core collection of Zingiber officinale from North-West Himalayas
Keywords: SSR، توالی ساده تکرار می شود; PCR, polymerase chain reaction; ISSR, inter simple sequence repeat; SSR, simple sequence repeat; IRAP, inter retrotransposons amplified polymorphism; dNTPs, deoxyribonucleotide triphosphate; DNA, deoxyribonucleic acid; MgCl2, magnesium chloride; TAE, Tris
Differential gene expression analysis between anagen and telogen of Capra hircus skin based on the de novo assembled transcriptome sequence
Keywords: SSR، توالی ساده تکرار می شود; CDS, coding sequence; SSR, simple sequence repeat; NR, non-redundant protein database; GO, gene ontology; KOG, Eukaryotic Orthologous Groups of proteins; KEGG, Kyoto Encyclopedia of Gene and Genomes; DEG, differentially expressed gene; RPKM, reads per kil
New insights into helitron transposable elements in the mesopolyploid species Brassica rapa
Keywords: SSR، توالی ساده تکرار می شود; TE, transposable element; RC, rolling circle; RPA, replication protein A; TSDs, target site duplications; TIRs, terminal inverted repeats; SSR, simple sequence repeat; psRNATarget, plant small RNA target analysis server; LTR, long terminal repeat; LINE, l
Inheritance and fine mapping of a restorer-of-fertility (Rf) gene for the cytoplasmic male sterility in soybean
Keywords: SSR، توالی ساده تکرار می شود; Rf, restorer-of-fertility gene; CMS, cytoplasmic male sterility; SSR, simple sequence repeat; GMS, genic male sterility; PTGMS, photoperiod-thermo-sensitive genic male sterility; MAS, marker assisted selection; PCR, polymerase chain reaction; PAGE, polyac
Segregation distortion in a region containing a male-sterility, female-sterility locus in soybean
Keywords: SSR، توالی ساده تکرار می شود; SSR, simple sequence repeat; PCR, polymerase chain reaction; BSA, bulked segregant analysis; MSFS, male-sterile female-sterile; MFFF, male-fertile female-fertile; Cm, centiMorgan; MLG, molecular linkage group; T-DNA, transferred DNA; BLAST, basic local al
Characterization and evolution of 5′ and 3′ untranslated regions in eukaryotes
Keywords: SSR، توالی ساده تکرار می شود; UTR, untranslated region; mRNA, messenger RNA; 5′ UTR, 5′ untranslated region; 3′ UTR, 3′ untranslated region; miRNA, MicroRNA; SSR, simple sequence repeat; SINE, short interspersed element; LINE, long interspersed element; LTR, long terminal repeat; ORF,
Assessment of genetic diversity in Psidium guajava L. using different approaches
Keywords: SSR، توالی ساده تکرار می شود; bp, base pairs; C, cortibel; CV, coefficient of variation; dH2O, distilled water; FCM, flow cytometry; pg, picograms; Sec XXI, Século XXI; SSR, simple sequence repeat; UPGMA, unweighted pair group method with arithmetic meanDiversity analysis; SSR markers
Selection and application of SSR markers for variety discrimination, genetic similarity and relation analysis in gerbera (Gerbera hybrida)
Keywords: SSR، توالی ساده تکرار می شود; CTAB, cetyltrimethyl ammonium bromide; DUS, distinctness uniformity and stability; EST, expression sequence tags; JSC, Jaccard similarity coefficient; PCR, polymerase chain reaction; PIC, polymorphic information content; SSR, simple sequence repeat; UPGMA
Characterization and Fine Mapping of a Novel Rice Albino Mutant low temperature albino 1
Keywords: SSR، توالی ساده تکرار می شود; Rice; low temperature albino; Mutant; Chloroplast development; Gene mappingPPR, pentatricopeptide repeat; SSR, simple sequence repeat; InD, insertion/deletion; SNP, single nucleotide polymorphism; PLB, prolamellar body; QTL, quantitative trait locus; ORF,
Tree legumes as feedstock for sustainable biofuel production: Opportunities and challenges
Keywords: SSR، توالی ساده تکرار می شود; DME, dimethyl ether; FAME, fatty acid methyl ester; LAP, low agricultural productivity; BNF, biological nitrogen fixation; RFLP, restriction fragment length polymorphism; AFLP, amplified fragment length polymorphism; SSR, simple sequence repeat; ISSR, int
Mapping QTLs for grain yield and yield components under high and low phosphorus treatments in maize (Zea mays L.)
Keywords: SSR، توالی ساده تکرار می شود; QTL, quantitative trait loci; SSR, simple sequence repeat; GY, grain yield per plant; RN, row number per ear; KN, kernel number per row; 100KW, 100-kernel weight; EL, ear length; ED, ear diameter; MAS, marker-assisted selection; HP, high phosphorus; LP, l
UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements
Keywords: SSR، توالی ساده تکرار می شود; ARE; AU-rich element; CPS; coding potential score; diSSR; dinucleotide simple sequence repeat; HCE; highly conserved element; UTR; untranslated region.; SSR, simple sequence repeat; HCE, highly conserved element; STR, short tandem repeats; Microsatellites
Seed physicochemical characteristics of field-grown US weedy red rice (Oryza sativa) biotypes: Contrasts with commercial cultivars
Keywords: SSR، توالی ساده تکرار می شود; Weedy rice; Amylose; Seed physicochemical properties; SSR marker2-AP, 2-acetyl-1-pyrroline; bp, base pairs; SSR, simple sequence repeat; URRN, Universal Regional Rice Nursery
EST-SSR sequences revealed the relationship of D-genome in diploid and tetraploid Species in Gossypium
Keywords: SSR، توالی ساده تکرار می شود; EST, Expressed sequence tag; PCR, Polymerase chain reaction; SSR, Simple sequence repeat; EST-SSR (eSSR), Simple sequence repeats developed from expressed sequence tagGossypium; Cotton; EST-SSR; D-genome; Diploid; Tetraploid; Genetic relationship
Repetitive DNA elements, nucleosome binding and human gene expression
Keywords: SSR، توالی ساده تکرار می شود; TE, transposable element; SSR, simple sequence repeat; TSS, transcriptional start site; GNF2, Novartis mammalian gene expresssion atlas 2.Transposable elements; Nucleosome binding; Epigenetics; Simple sequence repeats; Gene regulation; Promoter architectu
Wheat flour protein content and water absorption analysis in a doubled haploid population
Keywords: SSR، توالی ساده تکرار می شود; Wheat flour; Protein content; Water absorption; Awn; QTLAFLP, amplified fragment length polymorphism; LOD, log likelihood ratio; RAPD, rapid amplification of polymorphic DNA; REML, residual maximum likelihood; SSR, simple sequence repeat
A novel non-coding DNA family in Caenorhabditis elegans
Keywords: SSR، توالی ساده تکرار می شود; SINE (LINE), short (long) interspersed element; LTR, long terminal repeat; SSR, simple sequence repeat; gfp, green fluorescent protein.Repetitive element; Palindrome; Gene/element association; Enhancer; Genome organization