ProFASTA: A pipeline web server for fungal protein scanning with integration of cell surface prediction software

► ProFASTA is a web server for large-scale fungal cell surface protein analyses. ► Integration of big-PI, SignalP and TMHMM prediction software. ► Pattern, pI and composition scanning with sliding window options. ► Taxonomy selection of all fungal sequences in the NCBI Protein database. ► ProFASTA applied to proteome-wide GPI, Pir and hydrophobin protein identification.