کد مقاله | کد نشریه | سال انتشار | مقاله انگلیسی | نسخه تمام متن |
---|---|---|---|---|
2076407 | 1079443 | 2009 | 16 صفحه PDF | دانلود رایگان |
عنوان انگلیسی مقاله ISI
A robust correlation estimator and nonlinear recurrent model to infer genetic interactions in Saccharomyces cerevisiae and pathways of pulmonary disease in Homo sapiens
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کلمات کلیدی
موضوعات مرتبط
مهندسی و علوم پایه
ریاضیات
مدلسازی و شبیه سازی
پیش نمایش صفحه اول مقاله
![عکس صفحه اول مقاله: A robust correlation estimator and nonlinear recurrent model to infer genetic interactions in Saccharomyces cerevisiae and pathways of pulmonary disease in Homo sapiens A robust correlation estimator and nonlinear recurrent model to infer genetic interactions in Saccharomyces cerevisiae and pathways of pulmonary disease in Homo sapiens](/preview/png/2076407.png)
چکیده انگلیسی
In order to identify genes involved in complex diseases, it is crucial to study the genetic interactions at the systems biology level. By utilizing modern high throughput microarray technology, it has become feasible to obtain gene expressions data and turn it into knowledge that explains the regulatory behavior of genes. In this study, an unsupervised nonlinear model was proposed to infer gene regulatory networks on a genome-wide scale. The proposed model consists of two components, a robust correlation estimator and a nonlinear recurrent model. The robust correlation estimator was used to initialize the parameters of the nonlinear recurrent curve-fitting model. Then the initialized model was used to fit the microarray data. The model was used to simulate the underlying nonlinear regulatory mechanisms in biological organisms. The proposed algorithm was applied to infer the regulatory mechanisms of the general network in Saccharomyces cerevisiae and the pulmonary disease pathways in Homo sapiens. The proposed algorithm requires no prior biological knowledge to predict linkages between genes. The prediction results were checked against true positive links obtained from the YEASTRACT database, the TRANSFAC database, and the KEGG database. By checking the results with known interactions, we showed that the proposed algorithm could determine some meaningful pathways, many of which are supported by the existing literature.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Biosystems - Volume 98, Issue 3, December 2009, Pages 160-175
Journal: Biosystems - Volume 98, Issue 3, December 2009, Pages 160-175
نویسندگان
Cheng-Long Chuang, Chung-Ming Chen, Wai-Si Wong, Kun-Nan Tsai, Err-Cheng Chan, Joe-Air Jiang,