Human papillomavirus detection and typing using a nested-PCR-RFLP assay

BackgroundIt is clinically important to detect and type human papillomavirus (HPV) in a sensitive and specific manner.ObjectivesDevelopment of a nested-polymerase chain reaction-restriction fragment length polymorphism (nested-PCR-RFLP) assay to detect and type HPV based on the analysis of L1 gene.MethodsAnalysis of published DNA sequence of mucosal HPV types to select sequences of new primers. Design of an original nested-PCR assay using the new primers pair selected and classical MY09/11 primers. HPV detection and typing in cervical samples using the nested-PCR-RFLP assay.ResultsThe nested-PCR-RFLP assay detected and typed HPV in cervical samples. Of the total of 128 clinical samples submitted to simple PCR and nested-PCR for detection of HPV, 37 (28.9%) were positive for the virus by both methods and 25 samples were positive only by nested-PCR (67.5% increase in detection rate compared with single PCR). All HPV positive samples were effectively typed by RFLP assay.ConclusionThe method of nested-PCR proved to be an effective diagnostic tool for HPV detection and typing.