کد مقاله کد نشریه سال انتشار مقاله انگلیسی نسخه تمام متن
8408460 1545070 2017 7 صفحه PDF دانلود رایگان
عنوان انگلیسی مقاله ISI
LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning
موضوعات مرتبط
علوم زیستی و بیوفناوری بیوشیمی، ژنتیک و زیست شناسی مولکولی بیوتکنولوژی یا زیست‌فناوری
پیش نمایش صفحه اول مقاله
LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning
چکیده انگلیسی
Linked-read sequencing, using highly-multiplexed genome partitioning and barcoding, can span hundreds of kilobases to improve de novo assembly, haplotype phasing, and other applications. Based on our analysis of 14 datasets, we introduce LRSim that simulates linked-reads by emulating the library preparation and sequencing process with fine control over variants, linked-read characteristics, and the short-read profile. We conclude from the phasing and assembly of multiple datasets, recommendations on coverage, fragment length, and partitioning when sequencing genomes of different sizes and complexities. These optimizations improve results by orders of magnitude, and enable the development of novel methods. LRSim is available at https://github.com/aquaskyline/LRSIM.
ناشر
Database: Elsevier - ScienceDirect (ساینس دایرکت)
Journal: Computational and Structural Biotechnology Journal - Volume 15, 2017, Pages 478-484
نویسندگان
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